Rnf5 (ring finger protein 5) - Rat Genome Database

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Gene: Rnf5 (ring finger protein 5) Heterocephalus glaber
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Symbol: Rnf5
Name: ring finger protein 5
RGD ID: 18908994
Description: ENCODES a protein that exhibits identical protein binding (ortholog); protein-containing complex binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN ERAD pathway (ortholog); negative regulation of autophagy (ortholog); protein catabolic process (ortholog); ASSOCIATED WITH proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN endomembrane system (inferred); endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ubiquitin-protein ligase RNF5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,141,072 - 24,143,489 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,141,072 - 24,143,460 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Rnf5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,141,072 - 24,143,489 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,141,072 - 24,143,460 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RNF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38632,178,405 - 32,180,793 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl632,178,405 - 32,180,793 (+)EnsemblGRCh38hg38GRCh38
GRCh37632,146,182 - 32,148,570 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36632,254,140 - 32,256,548 (+)NCBINCBI36Build 36hg18NCBI36
Build 34632,254,149 - 32,256,547NCBI
Celera633,713,209 - 33,715,617 (+)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef631,900,360 - 31,902,768 (+)NCBIHuRef
CHM1_1632,148,646 - 32,151,054 (+)NCBICHM1_1
T2T-CHM13v2.0632,031,596 - 32,033,984 (+)NCBIT2T-CHM13v2.0
Rnf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,820,073 - 34,822,535 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,820,065 - 34,822,664 (-)EnsemblGRCm39 Ensembl
GRCm381734,601,099 - 34,603,561 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,601,091 - 34,603,690 (-)EnsemblGRCm38mm10GRCm38
MGSCv371734,738,044 - 34,740,506 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361734,209,155 - 34,211,617 (-)NCBIMGSCv36mm8
Celera1737,696,259 - 37,698,721 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.18NCBI
Rnf5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,150,032 - 4,152,593 (+)NCBIGRCr8
mRatBN7.2204,145,539 - 4,147,985 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,145,507 - 4,147,985 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx204,852,101 - 4,854,577 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0204,213,853 - 4,216,329 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,744,762 - 4,747,230 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0204,366,244 - 4,368,690 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,366,246 - 4,368,693 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0206,445,600 - 6,448,046 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4204,248,002 - 4,250,448 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera203,882,218 - 3,884,677 (-)NCBICelera
Cytogenetic Map20p12NCBI
Rnf5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437643,170 - 645,528 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955437643,133 - 645,528 (+)NCBIChiLan1.0ChiLan1.0
RNF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2546,639,384 - 46,643,870 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1642,600,950 - 42,605,349 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,825,799 - 31,828,188 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1632,705,674 - 32,708,076 (+)NCBIpanpan1.1PanPan1.1panPan2
RNF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,571,277 - 1,575,151 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,571,420 - 1,573,506 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,704,972 - 1,712,334 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0121,709,473 - 1,735,603 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,709,618 - 1,711,943 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,572,512 - 1,579,807 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,638,128 - 1,645,487 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,704,446 - 1,711,809 (+)NCBIUU_Cfam_GSD_1.0
Rnf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494636,136,620 - 36,139,137 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367271,422,207 - 1,424,739 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367271,422,207 - 1,424,808 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl724,215,704 - 24,217,971 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1724,215,493 - 24,217,983 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2728,036,330 - 28,038,820 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11739,851,491 - 39,853,912 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1739,851,874 - 39,853,819 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604432,077,801 - 32,080,253 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000019383   ⟹   ENSHGLP00000019192
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475424,141,072 - 24,143,489 (-)Ensembl
RefSeq Acc Id: XM_004846878   ⟹   XP_004846935
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475424,141,072 - 24,143,460 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004846935 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB16095 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000019192
GenBank Protein JAN99064 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004846935   ⟸   XM_004846878
- UniProtKB: G5C3I4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000019192   ⟸   ENSHGLT00000019383


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013772 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000019383 ENTREZGENE
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro RNF5/RNF185-like UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report hgl:101708759 UniProtKB/TrEMBL
NCBI Gene Rnf5 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5 UniProtKB/TrEMBL
  PTHR12313 UniProtKB/TrEMBL
Pfam zf-C3HC4_3 UniProtKB/TrEMBL
PROSITE ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt G5C3I4 ENTREZGENE, UniProtKB/TrEMBL