Heatr3 (HEAT repeat containing 3) - Rat Genome Database

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Gene: Heatr3 (HEAT repeat containing 3) Heterocephalus glaber
Analyze
Symbol: Heatr3
Name: HEAT repeat containing 3
RGD ID: 18908666
Description: ENCODES a protein that exhibits unfolded protein binding (inferred); INVOLVED IN erythrocyte maturation (ortholog); ASSOCIATED WITH Chromosome 16q12 Duplication Syndrome (ortholog); Diamond-Blackfan anemia (ortholog); Diamond-Blackfan anemia 1 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: HEAT repeat-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247576,558,342 - 6,597,552 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247576,522,808 - 6,597,460 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Heatr3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247576,558,342 - 6,597,552 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247576,522,808 - 6,597,460 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
HEATR3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381650,065,970 - 50,107,272 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1650,065,967 - 50,107,272 (+)EnsemblGRCh38hg38GRCh38
GRCh371650,099,881 - 50,141,183 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361648,657,382 - 48,696,893 (+)NCBINCBI36Build 36hg18NCBI36
Celera1634,613,203 - 34,679,975 (+)NCBICelera
Cytogenetic Map16q12.1NCBI
HuRef1635,988,200 - 36,053,654 (+)NCBIHuRef
CHM1_11651,507,140 - 51,546,658 (+)NCBICHM1_1
T2T-CHM13v2.01655,863,712 - 55,905,022 (+)NCBIT2T-CHM13v2.0
Heatr3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39888,864,453 - 88,901,656 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl888,864,483 - 88,898,655 (+)EnsemblGRCm39 Ensembl
GRCm38888,137,885 - 88,171,952 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl888,137,855 - 88,172,027 (+)EnsemblGRCm38mm10GRCm38
MGSCv37890,661,784 - 90,695,851 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36891,027,990 - 91,062,057 (+)NCBIMGSCv36mm8
Celera892,409,477 - 92,444,792 (+)NCBICelera
Cytogenetic Map8C3NCBI
cM Map843.06NCBI
Heatr3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81935,065,915 - 35,103,779 (-)NCBIGRCr8
mRatBN7.21918,892,477 - 18,930,502 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1918,893,144 - 18,930,509 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01919,858,419 - 19,896,782 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1919,858,416 - 19,896,421 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01930,883,214 - 30,921,221 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41920,204,999 - 20,242,364 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11920,210,399 - 20,247,067 (-)NCBI
Celera1918,777,148 - 18,815,511 (-)NCBICelera
Cytogenetic Map19p11NCBI
Heatr3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554338,183,395 - 8,224,117 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554338,183,701 - 8,224,117 (+)NCBIChiLan1.0ChiLan1.0
HEATR3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21859,523,229 - 59,563,729 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11665,428,284 - 65,469,664 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01630,329,163 - 30,369,658 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11649,212,645 - 49,251,043 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1649,212,645 - 49,251,043 (+)Ensemblpanpan1.1panPan2
HEATR3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1265,178,268 - 65,218,129 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl265,151,717 - 65,218,109 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha261,751,008 - 61,790,828 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0265,723,708 - 65,763,860 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl265,694,868 - 65,764,431 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1262,546,824 - 62,586,651 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0263,566,436 - 63,606,242 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0264,455,290 - 64,495,117 (-)NCBIUU_Cfam_GSD_1.0
Heatr3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934956,367,114 - 56,400,056 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364753,188,820 - 3,222,354 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364753,189,008 - 3,222,242 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HEATR3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl634,708,080 - 34,759,158 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1634,706,561 - 34,759,172 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HEATR3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1535,865,090 - 35,906,611 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl535,865,134 - 35,908,271 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604740,588,241 - 40,643,761 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000006220   ⟹   ENSHGLP00000006145
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247576,558,342 - 6,597,552 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000006221   ⟹   ENSHGLP00000006146
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247576,558,342 - 6,597,552 (-)Ensembl
RefSeq Acc Id: XM_004847955   ⟹   XP_004848012
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247576,558,306 - 6,597,459 (-)NCBI
RefSeq Acc Id: XM_021260943   ⟹   XP_021116602
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247576,522,808 - 6,597,460 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004848012 (Get FASTA)   NCBI Sequence Viewer  
  XP_021116602 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB15606 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000006146
GenBank Protein JAN99908 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021116602   ⟸   XM_021260943
- Peptide Label: isoform X2
- UniProtKB: A0AAX6T9L0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004848012   ⟸   XM_004847955
- Peptide Label: isoform X1
- UniProtKB: G5C245 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000006146   ⟸   ENSHGLT00000006221
Ensembl Acc Id: ENSHGLP00000006145   ⟸   ENSHGLT00000006220


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004488 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000006221 ENTREZGENE
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Armadillo UniProtKB/TrEMBL
  Nuclear_Import_Ribosome_Adapt UniProtKB/TrEMBL
KEGG Report hgl:101713807 UniProtKB/TrEMBL
NCBI Gene Heatr3 ENTREZGENE
PANTHER HEAT REPEAT-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam HEAT_EZ UniProtKB/TrEMBL
SMART ARM UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0AAX6T9L0 ENTREZGENE, UniProtKB/TrEMBL
  G5C245 ENTREZGENE, UniProtKB/TrEMBL