Heatr3 (HEAT repeat containing 3)

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Gene: Heatr3 (HEAT repeat containing 3) Mus musculus

Analyze

Symbol:

Heatr3

Name:

HEAT repeat containing 3

RGD ID:

1332478

MGI Page

MGI

Description:

Predicted to have unfolded protein binding activity. Predicted to be involved in protein import into nucleus and ribosomal large subunit biogenesis. Orthologous to human HEATR3 (HEAT repeat containing 3); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; ferric oxide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

C030036P15Rik; HEAT repeat-containing protein 3

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HEATR3 (HEAT repeat containing 3)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Heatr3 (HEAT repeat containing 3)	HGNC	Treefam, EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Heatr3 (HEAT repeat containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	HEATR3 (HEAT repeat containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	HEATR3 (HEAT repeat containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Heatr3 (HEAT repeat containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HEATR3 (HEAT repeat containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	HEATR3 (HEAT repeat containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Heatr3 (HEAT repeat containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Heatr3 (HEAT repeat containing 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	HEATR3 (HEAT repeat containing 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Danio rerio (zebrafish):	heatr3 (HEAT repeat containing 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam\|ZFIN)
Drosophila melanogaster (fruit fly):	CG10286	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Saccharomyces cerevisiae (baker's yeast):	SYO1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|Roundup)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	88,864,453 - 88,901,656 (+)	NCBI	GRCm39		mm39
GRCm38	8	88,137,885 - 88,171,952 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	88,137,855 - 88,172,027 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	90,661,784 - 90,695,851 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	91,027,990 - 91,062,057 (+)	NCBI			mm8
Celera	8	92,409,477 - 92,444,792 (+)	NCBI		Celera
Cytogenetic Map	8	C3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

amphetamine (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

butan-1-ol (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cylindrospermopsin (ISO)

dorsomorphin (ISO)

enzyme inhibitor (ISO)

ethyl methanesulfonate (ISO)

ferric oxide (EXP)

formaldehyde (ISO)

lead(0) (ISO)

lead(2+) (ISO)

manganese(II) chloride (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

paracetamol (ISO)

pentachlorophenol (EXP)

potassium chromate (ISO)

quercetin (ISO)

quinolin-8-ol (ISO)

rotenone (ISO)

SB 431542 (ISO)

sunitinib (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein import into nucleus (IBA)

ribosomal large subunit biogenesis (IBA)

Molecular Function

unfolded protein binding (IBA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

increased circulating glycerol level (IEA)

References

References - curated


1.	MGD and Homologene mouse data transfer
2.	MGD data from the GO Consortium
3.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	RGD automated import pipeline for gene-chemical interactions
6.	Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12477932	PMID:15489334	PMID:15782199	PMID:16141072	PMID:16141073	PMID:21873635
PMID:24457600	PMID:26365490

Genomics

Comparative Map Data

Heatr3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	88,864,453 - 88,901,656 (+)	NCBI	GRCm39		mm39
GRCm38	8	88,137,885 - 88,171,952 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	88,137,855 - 88,172,027 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	90,661,784 - 90,695,851 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	91,027,990 - 91,062,057 (+)	NCBI			mm8
Celera	8	92,409,477 - 92,444,792 (+)	NCBI		Celera
Cytogenetic Map	8	C3	NCBI

HEATR3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	16	50,065,970 - 50,107,272 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	16	50,065,941 - 50,107,272 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	16	50,099,881 - 50,139,392 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	48,657,382 - 48,696,893 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	16	34,613,203 - 34,679,975 (+)	NCBI
Cytogenetic Map	16	q12.1	NCBI
HuRef	16	35,988,200 - 36,053,654 (+)	NCBI		HuRef
CHM1_1	16	51,507,140 - 51,546,658 (+)	NCBI		CHM1_1

Heatr3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	19	19,858,419 - 19,896,782 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	19,858,416 - 19,896,421 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	30,883,214 - 30,921,221 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	20,204,999 - 20,242,364 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	19	20,210,399 - 20,247,067 (-)	NCBI
Celera	19	18,777,148 - 18,815,511 (-)	NCBI		Celera
Cytogenetic Map	19	p11	NCBI

Heatr3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955433	8,183,395 - 8,224,117 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955433	8,183,701 - 8,224,117 (+)	NCBI	ChiLan1.0	ChiLan1.0

HEATR3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	16	49,212,645 - 49,251,043 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	49,212,645 - 49,251,043 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	16	30,329,163 - 30,369,658 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

HEATR3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	2	65,151,717 - 65,218,109 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	2	65,178,268 - 65,218,129 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Heatr3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936475	3,189,008 - 3,222,242 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HEATR3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	34,597,636 - 34,759,216 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	34,706,561 - 34,759,172 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

HEATR3
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	35,865,090 - 35,906,611 (+)	NCBI
ChlSab1.1 Ensembl	5	35,865,134 - 35,908,271 (+)	Ensembl

Heatr3
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624757	6,522,808 - 6,597,460 (-)	NCBI

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32016544	117238700	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	34642776	114837007	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36163000	92728652	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37400000	109600000	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	39709256	94689598	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54287817	88287993	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	54706614	88706763	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	55545028	89545028	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58201479	92201479	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	58409776	92409776	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	60786850	94786976	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			63460107	97460107	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	63939547	97939696	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	65357768	99357920	Mouse
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	65600207	99600347	Mouse
1301767	Fcsa2_m	femoral cross-sectional area 2 (mouse)			Not determined		8	70305375	104305495	Mouse
4142283	Imraq2_m	immune response to AAV2 QTL 2 (mouse)			Not determined		8	70305375	104305495	Mouse
1558780	Idd22_m	insulin dependent diabetes susceptibility 22 (mouse)			Not determined		8	71102903	105103009	Mouse
4141395	Char2a_m	P. chabaudi malaria resistance QTL 2a (mouse)			Not determined			71136783	90202598	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71287817	123895615	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71287817	123895615	Mouse
1301872	Cd4ts3_m	CD4 T cell subset 3 (mouse)			Not determined		8	71396181	105396393	Mouse
1300920	Pitm3_m	prion incubation time 3 (mouse)			Not determined		8	73202495	107202598	Mouse
27095912	Pglq14_m	pelvic girdle length QTL 14, 16 week (mouse)					8	73400000	126100000	Mouse
1558890	Lith18_m	lithogenic gene 18 (mouse)			Not determined		8	75675517	109675623	Mouse
1357470	Obq16_m	obesity QTL 16 (mouse)			Not determined		8	75685348	109685497	Mouse
1301808	Nhdlq1_m	non-HDL QTL 1 (mouse)			Not determined		8	75685348	109685497	Mouse
1301874	Hdlq16_m	HDL QTL 16 (mouse)			Not determined		8	75685348	109685497	Mouse
10412234	Nhdlq14_m	non-HDL QTL 14 (mouse)			Not determined		8	75685348	109685497	Mouse
1301099	Cbm2_m	cerebellum weight 2 (mouse)			Not determined		8	78518613	112518703	Mouse
1301581	Char2_m	P. chabaudi malaria resistance QTL 2 (mouse)			Not determined		8	79082178	113082403	Mouse
12904012	Cfq10_m	conditioned fear QTL 10 (mouse)					8	80066775	89014359	Mouse
10755530	Wbc2_m	white blood cell count 2 (mouse)					8	81092664	115092664	Mouse
10755519	Wbc1_m	white blood cell count 1 (mouse)					8	81619151	115619151	Mouse
1301766	Desp1_m	despair 1 (mouse)			Not determined		8	84759576	118759741	Mouse
1302049	Heal1_m	wound healing/regeneration 1 (mouse)			Not determined		8	85716921	119717069	Mouse
1301253	Skmw2_m	skeletal muscle weight 2 (mouse)			Not determined		8	85716921	119717069	Mouse
10045619	Heal14_m	wound healing/regeneration 14 (mouse)			Not determined		8	85716921	119717069	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	833
Count of miRNA genes:	415
Interacting mature miRNAs:	463
Transcripts:	ENSMUST00000034079, ENSMUST00000121949, ENSMUST00000131682, ENSMUST00000137452, ENSMUST00000146946
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_172757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004934819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC126034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK044128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK047782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK052635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK134510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK136424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK140522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK163533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK163715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK165541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK191231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK192237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC030373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC048074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC065060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000034079 ⟹ ENSMUSP00000034079

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	88,137,855 - 88,172,027 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000121949 ⟹ ENSMUSP00000112812

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	88,137,856 - 88,171,997 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000131682

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	88,157,065 - 88,158,745 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000137452

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	88,164,482 - 88,167,045 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000146946

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	88,161,518 - 88,172,027 (+)	Ensembl

RefSeq Acc Id:

NM_172757 ⟹ NP_766345

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	88,864,513 - 88,898,580 (+)	NCBI
GRCm38	8	88,137,885 - 88,171,952 (+)	ENTREZGENE
MGSCv37	8	90,661,784 - 90,695,851 (+)	RGD
Celera	8	92,409,477 - 92,444,792 (+)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

CAGGCCGTCACATTGGACCCGCTGAGGGGAGACGCCAAGTAACGTCGAGCCTGGAAGTCGCCAC
GGGCCCGGTGGGCCCCAACGACGGCTGCTGCAGTCGTCCTCTTCTGGTCTGTCACTGCAGCCTC
CGTCGCCATGGGTAAGAGTCGGACGAAGCGCTTCAAGCGACCTCAGTTCTCCCCTATCGAGAGC
TGTCAGGCCGAGGCGGCGGCCGCGTCGAACGGGACTGGGGACGAGGAGGACGATGGGCCCGCGG
CGGAGCTTCTGGAGAAGCTCCAGCACCCGAGCGCCGAGGTCCGCGAGTGCGCCTGCGCGGGACT
GGCCCGGCTAGTGCAGCAGCGGCCCGCACTACCAGACTTAGCCCGTCGGGATGCTGTGCGCCGG
CTCGGGCCGCTGCTGCTGGACTCGAGTCTGGCGGTAAGGGAGACGGCGGCCGGAGCTCTGAGAA
ACCTCAGTGCTTGTGGAGGTTTTGACGTTTGTGATGACATGGTGGCAAAGGACATCATGACGCC
CCTGGTGGCACTACTGAGAGAGTGTCTCTCTGGACTGGATTCAAATGAGATGTCTCCACAGGAG
AAAGCTGATAAGAGAAATCCTGTAGAGAGCATAGCCAATGAGGCTGTGAATGTGCTGTGGAATG
TGTGTGAATGCAGTGGCAGAGCAGTGTCTATATTCAACAAAGAAGGGTGTTTGGAGATTGTGTT
ACAGTACTTACGTAGGTTCCCCACCAGTATTGACCTGGCTGTCTCCGTAGCGTATTGTTTACAG
ACAGTGACGGAAGATAACCCAGAGCTCCTGAAATCTTTTGATGGCACAGCACTACGTGTGCTGG
AGTCTGCTTTGCTTTGTCCTGTCGCCTCTATGGAATACATTCTTTTAAAGACACTGGTGGCAGG
CACCATCTGGAACCTAAAGGACATTATTCCATCTAAGAGTCAGGCAGAAATCATTAATGCCATC
CTAGGTGCCTTGTCTGAAGTTCTGGGTATGAATACTGGCAACATGGTCATTCAGATGAAGGAAG
CTGAAACCCAGCGGCTAAAGACTGCCGCAGAGAGTGAGGACATCCTAGCAAATGCTAACGGTGA
TGACTTGGTTGAAGATGATGAAATGGAAGAAATCCCTCATAAAAGAAAACTCAGAAGGAAAACA
TTTATTTCCGATTTACTTCCACCTACTGACAAGGAGCTGCGAGAGGCCATGGCGTTGCTGACAG
CTCAGCAGACTGCTCTGGAAGTTATTGTCAACATGTGCTGCAGTGAAGATCCCTCGGATGATGA
GTGGGAAGAACTGTCTAGTAGTGATGAAAGTGAAGCCTTTATGGAAAACTCCTTCAGTGAGTGC
AGTGGGCACCTGATGTCCCCATTGTGCCTGTCCCACGAGATTCACTCTGCCCTTACCAACTGCC
TCATTCCAGAGAAGGTTTTTGAGAAAACATCTTCACCAAACAGTGTTGCAGTTGACATATGTTC
TAAGAACCCTACTTGGAAACCTTTGATTAGGAAAATGAACACTATTCAGTGTAGAGCCCTTATG
TGTCTCCAGAGTCTTGTGTCTCTCCTGGACATAGACCATCTCGGTGGAGCCCCTGCTCTCCAGA
CTCTTGCTCAGCACCTGTCACAGATTCTTTTTTCTCAGCCAGATTTTGCTAAACATGATGATTT
TCTAGAAGCCATAAGTAGTGCTTTGAGGGCCCTTTTGCAAACAATGGCCTCCAAGAACATTCCA
CAGTGTATGACCCCTGAGCAGCTGATGACGCTGTGCAGAGAAGGCATTCATAGCAGTAGCATTG
GGGTTCGAGTGAATGTGGTCAGTATTTTGGGGATCACTGGGAGCGTCCTAGCCAAAGACGACGG
CACACTTGACACTCTGAAGACCATTGGGTGCTTTCTGCTGGAAGTCGCCACCAAAGACCCTTCC
CTTGTGGTAACAGGCGAGGCTCTGGATGCCCTCTTCGATGTTTTTGCAGATGGCGAAGCAGCTG
AAAAGGCTTCAGTTCAAATTAAATTGTTAGCGGCTTTGAAAGAATTCCAACCAGTCTTCAAAAT
GAAGATACGGAAAGAAGGGAGGGGCAAGTACAGTCCAGACCAGCTGTGTGTTCTCGACAATGTG
AAGATGAATTTGAGACGGTTTATTGCTTACCAGGAAACTGTTGAGAAAAGACTGACTTCTTAAA
CCATCAAGAGGACCAGAGCTAGGGCTGGCTGAGCATCTGCGTGCCTAGCTGGCACAACAGCCCT
GGGTCTATCCCTAGTTCCTGAGGAAAAAGGAGTAAGAGAAGCTGCTTCTCCTGATGGATTTAGT
GCTGAGAATACTGAAGGGTTTCCCTTGAATATATGTGCTTCCAAAGCCTTTTTTTCTTTTTTGA
GACAGGTTCTCTCTAGGTAGCCCCTCCTGGCCTGGAGCTCACAGAGGTCTACCTGCCTCAGTTT
TCTGATTGCTGGGCTTTAAGGTATTCAACACCACACCTGACCTCCAAAAGCCTTCTTTCACTGC
CTCTGTTCTCCGTGTTAGTTTGAATGTGAGAACCTGTAGGAAATGTGTGTTACATCTCCAACAT
ATTTTAGCCACTGAAAATGCCCCACATTTCAGGTGCTAGGGTCGGCATTCAGGGCCTTGCTCCT
GTGTCGTGAGCTCTACCACTAACTCCACCCCAGCCCTCAGGTGGTTCTTAATGGAAGGGCAGTA
AAGAGACTTCAAACAAGTACGTCCTTACATTTTTTTTTTTTAAGAAAAGAAATTAAATCATTGT
TGGGATGTTTTTTTAAAGCCAATAAATATCATTTTATATTAGCTAACTCCTAACAGAAATGTAA
AGATAAGCTTTATAAAATATTTTTGTCATGAAGTACTATATACCAATGATGAATCTTTTGTGAA
GTAAATGACTTGAATTTGTCACTGTGTAGATAGTGAGATGATTGAATTCTGTATAGGGGTCTGA
GCAGTTACTCTGGGTAACAGCATTTCCTGTCTTAATTTGATACAGAATCAGAAATTAGTAGAAA
ATGCTGGACATGGTGGTGCACACCTTTAATCCCAGATCTTCAGAGGCAGAGGCAGGAGGATCTC
TTGAGTTCAAGGCCAACCTGGACTACAGATGGAGCACCAGGATAGCCAGAGAGACCCTGTCTCA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XR_004934819

RefSeq Status:

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	88,864,453 - 88,901,656 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_766345	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH30373	(Get FASTA)	NCBI Sequence Viewer
	AAH48074	(Get FASTA)	NCBI Sequence Viewer
	AAH65060	(Get FASTA)	NCBI Sequence Viewer
	BAC31790	(Get FASTA)	NCBI Sequence Viewer
	BAC33155	(Get FASTA)	NCBI Sequence Viewer
	BAC35071	(Get FASTA)	NCBI Sequence Viewer
	BAE24413	(Get FASTA)	NCBI Sequence Viewer
	BAE37386	(Get FASTA)	NCBI Sequence Viewer
	EDL11051	(Get FASTA)	NCBI Sequence Viewer
	EDL11052	(Get FASTA)	NCBI Sequence Viewer
	Q8BQM4	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_766345 ⟸ NM_172757

- UniProtKB:

Q8BQM4 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MGKSRTKRFKRPQFSPIESCQAEAAAASNGTGDEEDDGPAAELLEKLQHPSAEVRECACAGLAR
LVQQRPALPDLARRDAVRRLGPLLLDSSLAVRETAAGALRNLSACGGFDVCDDMVAKDIMTPLV
ALLRECLSGLDSNEMSPQEKADKRNPVESIANEAVNVLWNVCECSGRAVSIFNKEGCLEIVLQY
LRRFPTSIDLAVSVAYCLQTVTEDNPELLKSFDGTALRVLESALLCPVASMEYILLKTLVAGTI
WNLKDIIPSKSQAEIINAILGALSEVLGMNTGNMVIQMKEAETQRLKTAAESEDILANANGDDL
VEDDEMEEIPHKRKLRRKTFISDLLPPTDKELREAMALLTAQQTALEVIVNMCCSEDPSDDEWE
ELSSSDESEAFMENSFSECSGHLMSPLCLSHEIHSALTNCLIPEKVFEKTSSPNSVAVDICSKN
PTWKPLIRKMNTIQCRALMCLQSLVSLLDIDHLGGAPALQTLAQHLSQILFSQPDFAKHDDFLE
AISSALRALLQTMASKNIPQCMTPEQLMTLCREGIHSSSIGVRVNVVSILGITGSVLAKDDGTL
DTLKTIGCFLLEVATKDPSLVVTGEALDALFDVFADGEAAEKASVQIKLLAALKEFQPVFKMKI
RKEGRGKYSPDQLCVLDNVKMNLRRFIAYQETVEKRLTS

hide sequence

RefSeq Acc Id:

ENSMUSP00000034079 ⟸ ENSMUST00000034079

RefSeq Acc Id:

ENSMUSP00000112812 ⟸ ENSMUST00000121949

Promoters

RGD ID:

8667805

Promoter ID:

EPDNEW_M11934

Type:

initiation region

Name:

Heatr3_1

Description:

Mus musculus HEAT repeat containing 3 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	88,137,875 - 88,137,935	EPDNEW

RGD ID:

6843289

Promoter ID:

MM_KWN:55194

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000121949, OTTMUST00000076961

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	90,661,331 - 90,662,012 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2444491	AgrOrtholog
Ensembl Genes	ENSMUSG00000031657	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000034079	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000112812	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000034079	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000121949	UniProtKB/TrEMBL
Gene3D-CATH	1.25.10.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	ARM-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:234549	UniProtKB/Swiss-Prot
MGD	MGI:2444491	ENTREZGENE
NCBI Gene	234549	ENTREZGENE
PhenoGen	Heatr3	PhenoGen
Superfamily-SCOP	SSF48371	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene	Mm.36291	ENTREZGENE
UniProt	E9PWH6_MOUSE	UniProtKB/TrEMBL
	HEAT3_MOUSE	UniProtKB/Swiss-Prot
	Q3TQJ6_MOUSE	UniProtKB/TrEMBL
	Q3USC0_MOUSE	UniProtKB/TrEMBL
	Q80VH5_MOUSE	UniProtKB/TrEMBL
	Q8BQM4	ENTREZGENE
	Q8BRI7_MOUSE	UniProtKB/TrEMBL
	Q8K2Q1_MOUSE	UniProtKB/TrEMBL
UniProt Secondary	Q8C731	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)