Agbl4 (AGBL carboxypeptidase 4) - Rat Genome Database

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Gene: Agbl4 (AGBL carboxypeptidase 4) Heterocephalus glaber
Analyze
Symbol: Agbl4
Name: AGBL carboxypeptidase 4 (Ensembl:ATP/GTP binding protein like 4)
RGD ID: 18908527
Description: ENCODES a protein that exhibits tubulin binding (ortholog); INVOLVED IN anterograde axonal transport of mitochondrion (ortholog); axonal transport (ortholog); C-terminal protein deglutamylation (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); Developmental Disease (ortholog); prostate cancer (ortholog); FOUND IN centriole (ortholog); ciliary basal body (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP/GTP binding protein like 4; cytosolic carboxypeptidase 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248593,061,342 - 4,418,967 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248593,061,185 - 4,420,220 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Agbl4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248593,061,342 - 4,418,967 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248593,061,185 - 4,420,220 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
AGBL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38148,522,511 - 50,023,954 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl148,532,854 - 50,023,954 (-)EnsemblGRCh38hg38GRCh38
GRCh37148,998,526 - 50,489,626 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36148,825,047 - 49,283,906 (-)NCBINCBI36Build 36hg18NCBI36
Celera147,284,584 - 48,775,481 (-)NCBICelera
Cytogenetic Map1p33NCBI
HuRef147,116,496 - 48,608,159 (-)NCBIHuRef
CHM1_1149,115,521 - 50,606,664 (-)NCBICHM1_1
T2T-CHM13v2.0148,393,346 - 49,902,907 (-)NCBIT2T-CHM13v2.0
Agbl4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394110,254,823 - 111,521,521 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4110,254,858 - 111,514,707 (+)EnsemblGRCm39 Ensembl
GRCm384110,397,649 - 111,664,324 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4110,397,661 - 111,664,324 (+)EnsemblGRCm38mm10GRCm38
MGSCv374110,070,396 - 111,330,115 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364109,895,630 - 110,467,081 (+)NCBIMGSCv36mm8
Celera4108,735,732 - 109,985,425 (+)NCBICelera
Cytogenetic Map4C7- D1NCBI
cM Map451.43NCBI
Agbl4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85130,483,551 - 131,762,906 (+)NCBIGRCr8
mRatBN7.25125,254,963 - 126,534,367 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5125,254,956 - 126,534,367 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5127,872,423 - 129,188,341 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05129,595,479 - 130,911,422 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05129,646,785 - 130,939,624 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05130,742,297 - 131,656,581 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5130,286,393 - 130,305,884 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl5131,380,297 - 131,455,211 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05134,582,789 - 135,484,937 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5124,499,912 - 125,235,495 (+)NCBICelera
Cytogenetic Map5q35NCBI
Agbl4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554648,880,455 - 10,193,907 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554648,847,401 - 10,195,184 (+)NCBIChiLan1.0ChiLan1.0
LOC100967527
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21176,847,227 - 178,304,258 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11175,987,924 - 177,445,646 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0147,807,888 - 49,264,213 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1149,316,524 - 50,770,899 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl149,511,379 - 49,560,314 (-)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl149,317,846 - 50,770,741 (-)Ensemblpanpan1.1panPan2
AGBL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11511,056,440 - 12,435,428 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1511,056,447 - 12,435,448 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1511,208,547 - 12,585,710 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01511,194,679 - 12,580,146 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1511,194,739 - 12,580,160 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11510,992,923 - 12,384,476 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01511,081,584 - 12,450,907 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01511,098,218 - 12,520,528 (+)NCBIUU_Cfam_GSD_1.0
AGBL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.16161,953,495 - 163,216,282 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26150,597,743 - 150,615,919 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AGBL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12082,893,087 - 84,293,578 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603332,830,718 - 34,295,008 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021247945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021247946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01092968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01092999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000005337   ⟹   ENSHGLP00000005268
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248593,061,342 - 4,418,967 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000005338   ⟹   ENSHGLP00000005269
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248593,061,342 - 4,413,080 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000005339   ⟹   ENSHGLP00000005270
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248593,061,342 - 3,686,495 (+)Ensembl
RefSeq Acc Id: XM_021247945   ⟹   XP_021103604
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248593,061,185 - 4,413,133 (+)NCBI
RefSeq Acc Id: XM_021247946   ⟹   XP_021103605
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248593,061,185 - 4,420,220 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021103604 (Get FASTA)   NCBI Sequence Viewer  
  XP_021103605 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000005268
  ENSHGLP00000005269
RefSeq Acc Id: XP_021103605   ⟸   XM_021247946
- Peptide Label: isoform X2
- UniProtKB: A0AAX6S331 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103604   ⟸   XM_021247945
- Peptide Label: isoform X1
- UniProtKB: A0AAX6S505 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000005270   ⟸   ENSHGLT00000005339
Ensembl Acc Id: ENSHGLP00000005268   ⟸   ENSHGLT00000005337
Ensembl Acc Id: ENSHGLP00000005269   ⟸   ENSHGLT00000005338


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003853 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000005337 ENTREZGENE
  ENSHGLT00000005338 ENTREZGENE
Gene3D-CATH 2.60.40.3120 UniProtKB/TrEMBL
  Zn peptidases UniProtKB/TrEMBL
InterPro Cytosolic_carboxypeptidase UniProtKB/TrEMBL
  Pepdidase_M14_N UniProtKB/TrEMBL
  Peptidase_M14 UniProtKB/TrEMBL
NCBI Gene Agbl4 ENTREZGENE
PANTHER CYTOSOLIC CARBOXYPEPTIDASE UniProtKB/TrEMBL
  CYTOSOLIC CARBOXYPEPTIDASE 6 UniProtKB/TrEMBL
Pfam Pepdidase_M14_N UniProtKB/TrEMBL
  Peptidase_M14 UniProtKB/TrEMBL
SMART Zn_pept UniProtKB/TrEMBL
Superfamily-SCOP Zn-dependent exopeptidases UniProtKB/TrEMBL
UniProt A0AAX6S331 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S505 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-10 Agbl4  AGBL carboxypeptidase 4  Agbl4  ATP/GTP binding protein like 4  Symbol and/or name change 5135510 APPROVED