Jakmip1 (janus kinase and microtubule interacting protein 1) - Rat Genome Database

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Gene: Jakmip1 (janus kinase and microtubule interacting protein 1) Heterocephalus glaber
Analyze
Symbol: Jakmip1
Name: janus kinase and microtubule interacting protein 1
RGD ID: 18907885
Description: ENCODES a protein that exhibits kinesin binding (ortholog); RNA binding (ortholog); INVOLVED IN cognition (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); intellectual disability (ortholog); FOUND IN membrane (ortholog); microtubule cytoskeleton (ortholog); ribonucleoprotein complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: janus kinase and microtubule-interacting protein 1; trichohyalin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475522,643,952 - 22,708,804 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475522,638,804 - 22,763,380 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cognition  (ISO)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Jakmip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475522,643,952 - 22,708,804 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475522,638,804 - 22,763,380 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JAKMIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3846,026,199 - 6,200,549 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl46,026,199 - 6,200,591 (-)EnsemblGRCh38hg38GRCh38
GRCh3746,027,926 - 6,202,276 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3646,078,827 - 6,253,219 (-)NCBINCBI36Build 36hg18NCBI36
Celera45,926,442 - 6,102,430 (-)NCBICelera
Cytogenetic Map4p16.1NCBI
HuRef45,961,566 - 6,050,468 (-)NCBIHuRef
HuRef46,102,359 - 6,135,610 (-)NCBIHuRef
CHM1_146,025,980 - 6,199,980 (-)NCBICHM1_1
T2T-CHM13v2.045,999,090 - 6,174,505 (-)NCBIT2T-CHM13v2.0
Jakmip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39537,182,424 - 37,307,958 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl537,271,128 - 37,274,817 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl537,185,679 - 37,307,951 (+)EnsemblGRCm39 Ensembl
GRCm38537,025,852 - 37,150,614 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl537,028,335 - 37,150,607 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl537,113,784 - 37,117,473 (+)EnsemblGRCm38mm10GRCm38
MGSCv37537,442,096 - 37,516,537 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36537,339,165 - 37,413,544 (+)NCBIMGSCv36mm8
Celera534,502,607 - 34,577,004 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map519.66NCBI
Jakmip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81477,871,034 - 77,991,566 (-)NCBIGRCr8
mRatBN7.21473,646,299 - 73,766,830 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1473,632,428 - 73,713,993 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1478,091,571 - 78,212,116 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01479,332,443 - 79,452,986 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01475,777,267 - 75,897,937 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01478,403,448 - 78,523,108 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1478,424,960 - 78,469,480 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01478,377,060 - 78,443,092 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41479,234,978 - 79,280,217 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1472,619,482 - 72,664,611 (-)NCBICelera
Cytogenetic Map14q21NCBI
Jakmip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555143,986,975 - 4,106,129 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555143,987,231 - 4,088,762 (+)NCBIChiLan1.0ChiLan1.0
JAKMIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v236,296,000 - 6,473,090 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan146,224,588 - 6,401,880 (-)NCBINHGRI_mPanPan1
PanPan1.146,100,985 - 6,272,453 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl46,100,985 - 6,191,991 (-)Ensemblpanpan1.1panPan2
JAKMIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1371,202,903 - 71,344,541 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl371,204,244 - 71,344,881 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha373,747,453 - 73,895,031 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0371,964,007 - 72,105,612 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl371,965,152 - 72,105,574 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1371,234,097 - 71,375,652 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0371,397,307 - 71,537,675 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0371,772,785 - 71,920,789 (-)NCBIUU_Cfam_GSD_1.0
Jakmip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528564,452,194 - 64,578,562 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647718,151,372 - 18,280,377 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647718,177,288 - 18,280,286 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JAKMIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl84,492,389 - 4,612,204 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.184,472,852 - 4,613,986 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.282,813,165 - 2,855,361 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JAKMIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12742,157,145 - 42,330,117 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2742,167,423 - 42,243,485 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604788,949,803 - 89,123,472 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000007298   ⟹   ENSHGLP00000007213
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475522,643,952 - 22,708,804 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000007299   ⟹   ENSHGLP00000007214
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475522,645,133 - 22,708,804 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000007300   ⟹   ENSHGLP00000007215
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475522,661,160 - 22,708,804 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000007301   ⟹   ENSHGLP00000007216
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475522,665,599 - 22,675,637 (-)Ensembl
RefSeq Acc Id: XM_004847312   ⟹   XP_004847369
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475522,638,804 - 22,763,380 (-)NCBI
RefSeq Acc Id: XM_013073090   ⟹   XP_012928544
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475522,665,384 - 22,763,376 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004847369 (Get FASTA)   NCBI Sequence Viewer  
  XP_012928544 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000007213
RefSeq Acc Id: XP_004847369   ⟸   XM_004847312
- Peptide Label: isoform X2
- UniProtKB: G5B319 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012928544   ⟸   XM_013073090
- Peptide Label: isoform X1
Ensembl Acc Id: ENSHGLP00000007216   ⟸   ENSHGLT00000007301
Ensembl Acc Id: ENSHGLP00000007213   ⟸   ENSHGLT00000007298
Ensembl Acc Id: ENSHGLP00000007215   ⟸   ENSHGLT00000007300
Ensembl Acc Id: ENSHGLP00000007214   ⟸   ENSHGLT00000007299


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005253 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000007298 ENTREZGENE
InterPro JAKMIP UniProtKB/TrEMBL
  JAKMIP_C UniProtKB/TrEMBL
NCBI Gene Jakmip1 ENTREZGENE
PANTHER JANUS KINASE AND MICROTUBULE-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam JAKMIP_CC3 UniProtKB/TrEMBL
UniProt A0AAX6PAN0_HETGA UniProtKB/TrEMBL
  A0AAX6QXR4_HETGA UniProtKB/TrEMBL
  G5B319 ENTREZGENE, UniProtKB/TrEMBL