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Gene: Kiaa0040 (KIAA0040 ortholog) Heterocephalus glaber

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Symbol:

Kiaa0040

Name:

KIAA0040 ortholog

RGD ID:

18907620

Description:

ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); antithrombin III deficiency (ortholog); gastrointestinal stromal tumor (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

uncharacterized protein KIAA0040 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	KIAA0040 (KIAA0040)	NCBI	Ortholog
Mus musculus (house mouse):	4930523C07Rik (RIKEN cDNA 4930523C07 gene)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Kiaa0040 (KIAA0040 ortholog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Kiaa0040 (KIAA0040 ortholog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	KIAA0040 (KIAA0040 ortholog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	KIAA0040 (KIAA0040)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Kiaa0040 (KIAA0040 ortholog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	KIAA0040 (KIAA0040)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	KIAA0040 (KIAA0040 ortholog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624771	6,826,573 - 6,864,188 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624771	6,826,430 - 6,864,238 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

1q24 Deletion Syndrome (ISO)

antithrombin III deficiency (ISO)

gastrointestinal stromal tumor (ISO)

parathyroid carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

Kiaa0040
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624771	6,826,573 - 6,864,188 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624771	6,826,430 - 6,864,238 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

KIAA0040
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	175,156,986 - 175,192,987 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	175,156,986 - 175,192,999 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	175,126,122 - 175,162,123 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	173,392,745 - 173,396,616 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	148,236,421 - 148,272,507 (-)	NCBI		Celera
Cytogenetic Map	1	q25.1	NCBI
HuRef	1	146,352,413 - 146,388,494 (-)	NCBI		HuRef
CHM1_1	1	176,549,003 - 176,585,082 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	174,510,730 - 174,546,720 (-)	NCBI		T2T-CHM13v2.0

4930523C07Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	159,871,950 - 159,906,157 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	159,871,952 - 159,907,778 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	160,044,380 - 160,078,587 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	160,044,382 - 160,080,208 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	161,974,511 - 162,008,718 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	161,881,064 - 161,912,695 (+)	NCBI		MGSCv36	mm8
Celera	1	162,453,476 - 162,488,323 (+)	NCBI		Celera
Cytogenetic Map	1	H2.1	NCBI
cM Map	1	69.32	NCBI

Kiaa0040
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	74,807,959 - 74,845,530 (+)	NCBI		GRCr8
mRatBN7.2	13	72,274,519 - 72,312,103 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	72,274,552 - 72,312,103 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	74,859,039 - 74,896,604 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	76,151,778 - 76,189,340 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	73,411,158 - 73,448,710 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	77,784,516 - 77,822,333 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	77,784,808 - 77,822,333 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	82,693,302 - 82,730,776 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	75,458,253 - 75,495,823 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	13	72,080,250 - 72,117,514 (+)	NCBI		Celera
Cytogenetic Map	13	q22	NCBI

Kiaa0040
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955406	14,960,837 - 14,961,459 (-)	NCBI	ChiLan1.0	ChiLan1.0

KIAA0040
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	74,537,950 - 74,573,395 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	74,211,389 - 74,243,724 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	150,669,479 - 150,705,474 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	154,366,989 - 154,403,035 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	154,370,708 - 154,371,004 (-)	Ensembl	panpan1.1		panPan2

KIAA0040
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	24,201,130 - 24,235,716 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	24,235,021 - 24,235,323 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	23,725,978 - 23,762,799 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	23,948,598 - 23,985,476 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	23,982,028 - 23,982,330 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	23,861,751 - 23,898,557 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	23,952,770 - 23,989,599 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	24,097,092 - 24,133,953 (+)	NCBI		UU_Cfam_GSD_1.0

Kiaa0040
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	95,197,399 - 95,228,134 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936481	13,044,194 - 13,076,700 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KIAA0040
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	117,253,831 - 117,287,741 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	117,253,805 - 117,288,348 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	128,996,587 - 129,030,337 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KIAA0040
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	54,063,776 - 54,098,518 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	54,095,097 - 54,095,387 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	55,634,632 - 55,670,070 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013075347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021265390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AHKG01050336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AHKG01050337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSHGLT00000012071 ⟹ ENSHGLP00000011939

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla_female_1.0 Ensembl	NW_004624771	6,826,573 - 6,864,188 (+)	Ensembl

RefSeq Acc Id:

XM_013075347 ⟹ XP_012930801

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624771	6,826,430 - 6,864,238 (+)	NCBI

RefSeq Acc Id:

XM_021265390 ⟹ XP_021121049

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624771	6,826,430 - 6,864,238 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_012930801	(Get FASTA)	NCBI Sequence Viewer
	XP_021121049	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSHGLP00000011939

RefSeq Acc Id:	XP_021121049 ⟸ XM_021265390
- UniProtKB:	A0AAX6TKI4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_012930801 ⟸ XM_013075347
- UniProtKB:	A0AAX6TKI4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSHGLP00000011939 ⟸ ENSHGLT00000012071

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSHGLG00000008552	Ensembl, ENTREZGENE
Ensembl Transcript	ENSHGLT00000012071	ENTREZGENE
NCBI Gene	Kiaa0040	ENTREZGENE
UniProt	A0AAX6TKI4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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