KIAA0040 (KIAA0040 ortholog) - Rat Genome Database

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Gene: KIAA0040 (KIAA0040 ortholog) Chlorocebus sabaeus
Analyze
Symbol: KIAA0040
Name: KIAA0040 ortholog (Ensembl:KIAA0040)
RGD ID: 18531363
Description: ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); antithrombin III deficiency (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein KIAA0040 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12554,063,776 - 54,098,518 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2554,095,097 - 54,095,387 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605555,634,632 - 55,670,070 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
KIAA0040
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12554,063,776 - 54,098,518 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2554,095,097 - 54,095,387 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605555,634,632 - 55,670,070 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
KIAA0040
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381175,156,986 - 175,192,987 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1175,156,986 - 175,192,999 (-)EnsemblGRCh38hg38GRCh38
GRCh371175,126,122 - 175,162,123 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361173,392,745 - 173,396,616 (-)NCBINCBI36Build 36hg18NCBI36
Celera1148,236,421 - 148,272,507 (-)NCBICelera
Cytogenetic Map1q25.1NCBI
HuRef1146,352,413 - 146,388,494 (-)NCBIHuRef
CHM1_11176,549,003 - 176,585,082 (-)NCBICHM1_1
T2T-CHM13v2.01174,510,730 - 174,546,720 (-)NCBIT2T-CHM13v2.0
4930523C07Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,871,950 - 159,906,157 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1159,871,952 - 159,907,778 (+)EnsemblGRCm39 Ensembl
GRCm381160,044,380 - 160,078,587 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1160,044,382 - 160,080,208 (+)EnsemblGRCm38mm10GRCm38
MGSCv371161,974,511 - 162,008,718 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,881,064 - 161,912,695 (+)NCBIMGSCv36mm8
Celera1162,453,476 - 162,488,323 (+)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map169.32NCBI
Kiaa0040
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81374,807,959 - 74,845,530 (+)NCBIGRCr8
mRatBN7.21372,274,519 - 72,312,103 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1372,274,552 - 72,312,103 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1374,859,039 - 74,896,604 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01376,151,778 - 76,189,340 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01373,411,158 - 73,448,710 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01377,784,516 - 77,822,333 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1377,784,808 - 77,822,333 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01382,693,302 - 82,730,776 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41375,458,253 - 75,495,823 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1372,080,250 - 72,117,514 (+)NCBICelera
Cytogenetic Map13q22NCBI
Kiaa0040
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540614,960,837 - 14,961,459 (-)NCBIChiLan1.0ChiLan1.0
KIAA0040
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2174,537,950 - 74,573,395 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1174,211,389 - 74,243,724 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01150,669,479 - 150,705,474 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11154,366,989 - 154,403,035 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1154,370,708 - 154,371,004 (-)Ensemblpanpan1.1panPan2
KIAA0040
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1724,201,130 - 24,235,716 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl724,235,021 - 24,235,323 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha723,725,978 - 23,762,799 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0723,948,598 - 23,985,476 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl723,982,028 - 23,982,330 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1723,861,751 - 23,898,557 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0723,952,770 - 23,989,599 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0724,097,092 - 24,133,953 (+)NCBIUU_Cfam_GSD_1.0
Kiaa0040
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934495,197,399 - 95,228,134 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648113,044,194 - 13,076,700 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIAA0040
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9117,253,831 - 117,287,741 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19117,253,805 - 117,288,348 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29128,996,587 - 129,030,337 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Kiaa0040
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247716,826,573 - 6,864,188 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247716,826,430 - 6,864,238 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in KIAA0040
845 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000018298   ⟹   ENSCSAP00000017759
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2554,095,097 - 54,095,387 (+)Ensembl
RefSeq Acc Id: XM_007989405   ⟹   XP_007987596
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12554,064,054 - 54,098,518 (+)NCBI
Vero_WHO_p1.0NW_02366605555,635,633 - 55,670,070 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007989406   ⟹   XP_007987597
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12554,064,054 - 54,098,518 (+)NCBI
Vero_WHO_p1.0NW_02366605555,635,179 - 55,670,070 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007989407   ⟹   XP_007987598
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12554,063,785 - 54,098,518 (+)NCBI
Vero_WHO_p1.0NW_02366605555,635,179 - 55,670,070 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007989408   ⟹   XP_007987599
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12554,064,054 - 54,095,635 (+)NCBI
Vero_WHO_p1.0NW_02366605555,635,633 - 55,670,070 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037985918   ⟹   XP_037841846
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605555,634,632 - 55,661,132 (+)NCBI
RefSeq Acc Id: XM_037985919   ⟹   XP_037841847
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605555,635,633 - 55,670,070 (+)NCBI
RefSeq Acc Id: XM_037985920   ⟹   XP_037841848
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605555,635,179 - 55,670,070 (+)NCBI
RefSeq Acc Id: XM_037985921   ⟹   XP_037841849
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605555,635,179 - 55,670,070 (+)NCBI
RefSeq Acc Id: XP_007987598   ⟸   XM_007989407
- Peptide Label: isoform X2
- UniProtKB: A0A0D9SA70 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007987597   ⟸   XM_007989406
- Peptide Label: isoform X2
- UniProtKB: A0A0D9SA70 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007987596   ⟸   XM_007989405
- Peptide Label: isoform X2
- UniProtKB: A0A0D9SA70 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007987599   ⟸   XM_007989408
- Peptide Label: isoform X2
- UniProtKB: A0A0D9SA70 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000017759   ⟸   ENSCSAT00000018298
RefSeq Acc Id: XP_037841846   ⟸   XM_037985918
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037841849   ⟸   XM_037985921
- Peptide Label: isoform X2
- UniProtKB: A0A0D9SA70 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841848   ⟸   XM_037985920
- Peptide Label: isoform X2
- UniProtKB: A0A0D9SA70 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841847   ⟸   XM_037985919
- Peptide Label: isoform X2
- UniProtKB: A0A0D9SA70 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000237 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018298.1 UniProtKB/TrEMBL
InterPro KIAA0040-like UniProtKB/TrEMBL
KEGG Report csab:103230547 UniProtKB/TrEMBL
NCBI Gene KIAA0040 ENTREZGENE
PANTHER PTHR40382 UniProtKB/TrEMBL
  RIKEN CDNA 4930523C07 GENE UniProtKB/TrEMBL
UniProt A0A0D9SA70 ENTREZGENE, UniProtKB/TrEMBL