Apoo (apolipoprotein O) - Rat Genome Database

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Gene: Apoo (apolipoprotein O) Heterocephalus glaber
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Symbol: Apoo
Name: apolipoprotein O
RGD ID: 18907393
Description: INVOLVED IN cristae formation (inferred); PARTICIPATES IN mitochondrial protein import pathway; ASSOCIATED WITH autistic disorder (ortholog); lactic acidosis (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum membrane (ortholog); extracellular region (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MICOS complex subunit MIC26
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624897228,049 - 299,069 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624897228,324 - 299,017 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Apoo
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624897228,049 - 299,069 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624897228,324 - 299,017 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
APOO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X23,833,353 - 23,907,938 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX23,833,353 - 23,907,938 (-)EnsemblGRCh38hg38GRCh38
GRCh37X23,851,470 - 23,926,055 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X23,761,391 - 23,835,958 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX27,970,217 - 28,043,546 (-)NCBICelera
Cytogenetic MapXp22.11NCBI
HuRefX21,597,250 - 21,670,104 (-)NCBIHuRef
CHM1_1X23,882,370 - 23,957,282 (-)NCBICHM1_1
T2T-CHM13v2.0X23,417,034 - 23,491,615 (-)NCBIT2T-CHM13v2.0
Apoo
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X93,410,615 - 93,460,699 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX93,410,723 - 93,460,699 (+)EnsemblGRCm39 Ensembl
GRCm38X94,367,010 - 94,417,093 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX94,367,117 - 94,417,093 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X91,612,449 - 91,662,429 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X90,619,873 - 90,669,806 (+)NCBIMGSCv36mm8
CeleraX81,307,125 - 81,343,955 (+)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX41.56NCBI
Apoo
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X63,151,736 - 63,256,696 (+)NCBIGRCr8
mRatBN7.2X59,157,971 - 59,262,940 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX59,158,049 - 59,262,940 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX60,611,279 - 60,714,042 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X64,112,402 - 64,215,169 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X61,657,121 - 61,768,684 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X63,521,033 - 63,625,134 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX63,520,991 - 63,625,134 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X64,430,860 - 64,534,961 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X81,784,706 - 81,889,551 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX59,587,672 - 59,692,328 (+)NCBICelera
Cytogenetic MapXq22NCBI
Apoo
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555094,255,030 - 4,325,568 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555094,256,834 - 4,325,086 (-)NCBIChiLan1.0ChiLan1.0
APOO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X25,634,548 - 25,708,412 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X25,637,937 - 25,711,738 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X16,432,822 - 16,506,668 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X23,807,998 - 23,879,906 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX23,806,477 - 23,880,518 (-)Ensemblpanpan1.1panPan2
APOO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X19,501,849 - 19,555,425 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X19,456,861 - 19,510,690 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX19,456,893 - 19,510,486 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X19,496,013 - 19,549,863 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X19,529,419 - 19,583,232 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X19,585,588 - 19,639,345 (-)NCBIUU_Cfam_GSD_1.0
Apoo
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X12,401,975 - 12,490,174 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936624667,297 - 721,464 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936624667,659 - 754,944 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APOO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX19,953,158 - 20,017,727 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X19,953,147 - 20,017,784 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X21,323,359 - 21,366,041 (-)NCBISscrofa10.2Sscrofa10.2susScr3
APOO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X22,295,822 - 22,377,670 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX22,295,037 - 22,377,668 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605624,181,041 - 24,254,590 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000007671   ⟹   ENSHGLP00000007585
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624897228,049 - 299,069 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000007672   ⟹   ENSHGLP00000007586
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624897228,049 - 293,372 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000007673   ⟹   ENSHGLP00000007587
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624897233,639 - 298,592 (-)Ensembl
RefSeq Acc Id: XM_021250187   ⟹   XP_021105846
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624897235,735 - 298,983 (-)NCBI
RefSeq Acc Id: XM_021250188   ⟹   XP_021105847
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624897228,324 - 298,982 (-)NCBI
RefSeq Acc Id: XM_021250189   ⟹   XP_021105848
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624897235,735 - 298,981 (-)NCBI
RefSeq Acc Id: XM_021250190   ⟹   XP_021105849
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624897235,735 - 299,017 (-)NCBI
RefSeq Acc Id: XM_021250191   ⟹   XP_021105850
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624897235,735 - 293,339 (-)NCBI
RefSeq Acc Id: XM_021250192   ⟹   XP_021105851
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624897235,735 - 298,786 (-)NCBI
RefSeq Acc Id: XM_021250193   ⟹   XP_021105852
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624897235,735 - 298,993 (-)NCBI
RefSeq Acc Id: XM_021250194   ⟹   XP_021105853
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624897235,735 - 298,988 (-)NCBI
RefSeq Acc Id: XM_021250195   ⟹   XP_021105854
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624897235,735 - 298,941 (-)NCBI
RefSeq Acc Id: XP_021105847   ⟸   XM_021250188
- Peptide Label: isoform X2
- UniProtKB: A0A0P6IX32 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021105849   ⟸   XM_021250190
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021105852   ⟸   XM_021250193
- Peptide Label: isoform X6
RefSeq Acc Id: XP_021105853   ⟸   XM_021250194
- Peptide Label: isoform X7
RefSeq Acc Id: XP_021105846   ⟸   XM_021250187
- Peptide Label: isoform X1
- UniProtKB: A0A0P6IX32 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021105848   ⟸   XM_021250189
- Peptide Label: isoform X3
- UniProtKB: A0A0P6IX32 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021105854   ⟸   XM_021250195
- Peptide Label: isoform X8
- UniProtKB: G5BCE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021105851   ⟸   XM_021250192
- Peptide Label: isoform X5
- UniProtKB: G5BCE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021105850   ⟸   XM_021250191
- Peptide Label: isoform X5
- UniProtKB: G5BCE9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000007585   ⟸   ENSHGLT00000007671
Ensembl Acc Id: ENSHGLP00000007586   ⟸   ENSHGLT00000007672
Ensembl Acc Id: ENSHGLP00000007587   ⟸   ENSHGLT00000007673


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005507 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000007671 ENTREZGENE
  ENSHGLT00000007672 ENTREZGENE
InterPro MIC26/MIC27 UniProtKB/TrEMBL
  MIC26/MIC27_animal UniProtKB/TrEMBL
KEGG Report hgl:101696400 UniProtKB/TrEMBL
NCBI Gene Apoo ENTREZGENE
PANTHER MICOS COMPLEX SUBUNIT MIC26 UniProtKB/TrEMBL
  PTHR14564 UniProtKB/TrEMBL
Pfam ApoO UniProtKB/TrEMBL
UniProt A0A0P6IX32 ENTREZGENE, UniProtKB/TrEMBL
  G5BCE9 ENTREZGENE, UniProtKB/TrEMBL