Uncx (UNC homeobox) - Rat Genome Database

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Gene: Uncx (UNC homeobox) Heterocephalus glaber
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Symbol: Uncx
Name: UNC homeobox
RGD ID: 18906989
Description: ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cartilage condensation (ortholog); common myeloid progenitor cell proliferation (ortholog); dorsal spinal cord development (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox protein unc-4 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474026,793,627 - 26,797,752 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474026,793,627 - 26,797,753 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Uncx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474026,793,627 - 26,797,752 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474026,793,627 - 26,797,753 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
UNCX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3871,232,872 - 1,237,326 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl71,232,872 - 1,237,326 (+)EnsemblGRCh38hg38GRCh38
GRCh3771,272,508 - 1,276,962 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3671,239,180 - 1,243,139 (+)NCBINCBI36Build 36hg18NCBI36
Celera71,234,813 - 1,238,773 (+)NCBICelera
Cytogenetic Map7p22.3NCBI
HuRef71,189,971 - 1,193,933 (+)NCBIHuRef
CHM1_171,272,238 - 1,276,197 (+)NCBICHM1_1
T2T-CHM13v2.071,340,556 - 1,345,014 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v271,325,450 - 1,343,496 (+)NCBI
Uncx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395139,529,620 - 139,533,934 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5139,529,249 - 139,533,934 (+)EnsemblGRCm39 Ensembl
GRCm385139,543,865 - 139,548,179 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5139,543,494 - 139,548,179 (+)EnsemblGRCm38mm10GRCm38
MGSCv375140,019,852 - 140,024,133 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365139,797,551 - 139,801,821 (+)NCBIMGSCv36mm8
Celera5136,597,528 - 136,635,493 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map578.75NCBI
Uncx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81220,206,604 - 20,211,125 (-)NCBIGRCr8
mRatBN7.21215,092,779 - 15,097,300 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1215,092,784 - 15,097,300 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1215,902,680 - 15,907,200 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01216,526,425 - 16,530,945 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01215,552,317 - 15,556,839 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01217,182,158 - 17,186,679 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1217,182,163 - 17,186,679 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01219,169,967 - 19,174,488 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41215,576,541 - 15,581,062 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11215,606,472 - 15,610,990 (-)NCBI
Celera1216,848,463 - 16,852,881 (-)NCBICelera
Cytogenetic Map12q11NCBI
Uncx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554608,941,629 - 8,945,761 (+)NCBIChiLan1.0ChiLan1.0
UNCX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v266,181,796 - 6,186,302 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1754,506,485 - 54,510,971 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v071,479,804 - 1,485,041 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
UNCX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1615,652,600 - 15,657,016 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl615,653,576 - 15,657,927 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha617,126,224 - 17,130,466 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0615,784,556 - 15,788,864 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl615,784,878 - 15,788,866 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1615,587,278 - 15,591,644 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0615,513,954 - 15,518,308 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0615,801,188 - 15,805,422 (-)NCBIUU_Cfam_GSD_1.0
UNCX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3804,113 - 808,187 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13804,188 - 808,574 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23913,067 - 917,837 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UNCX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12820,365,400 - 20,367,458 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660901,339,476 - 1,344,292 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004840341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01018507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000018894   ⟹   ENSHGLP00000018707
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474026,793,627 - 26,797,752 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000018895   ⟹   ENSHGLP00000018708
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474026,793,627 - 26,794,365 (+)Ensembl
RefSeq Acc Id: XM_004840341   ⟹   XP_004840398
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474026,793,627 - 26,797,753 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004840398 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018707
RefSeq Acc Id: XP_004840398   ⟸   XM_004840341
Ensembl Acc Id: ENSHGLP00000018708   ⟸   ENSHGLT00000018895
Ensembl Acc Id: ENSHGLP00000018707   ⟸   ENSHGLT00000018894


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013399 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000018894 ENTREZGENE
NCBI Gene Uncx ENTREZGENE