Iba57 (iron-sulfur cluster assembly factor IBA57) - Rat Genome Database

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Gene: Iba57 (iron-sulfur cluster assembly factor IBA57) Heterocephalus glaber
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Symbol: Iba57
Name: iron-sulfur cluster assembly factor IBA57
RGD ID: 18906548
Description: ENCODES a protein that exhibits transferase activity (inferred); INVOLVED IN iron-sulfur cluster assembly (inferred); PARTICIPATES IN mitochondrial iron-sulfur cluster protein biogenesis pathway; ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 74 (ortholog); FOUND IN mitochondrial matrix (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: IBA57 homolog, iron-sulfur cluster assembly; IBA57, iron-sulfur cluster assembly homolog; putative transferase CAF17, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624937908,235 - 914,229 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624937908,216 - 914,229 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Iba57
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624937908,235 - 914,229 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624937908,216 - 914,229 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
IBA57
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381228,165,804 - 228,182,257 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1228,165,804 - 228,182,257 (+)EnsemblGRCh38hg38GRCh38
GRCh371228,353,505 - 228,369,958 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361226,420,139 - 226,436,581 (+)NCBINCBI36Build 36hg18NCBI36
Celera1201,543,670 - 201,559,968 (+)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1198,868,404 - 198,884,736 (+)NCBIHuRef
CHM1_11229,625,750 - 229,642,264 (+)NCBICHM1_1
T2T-CHM13v2.01227,354,800 - 227,371,041 (+)NCBIT2T-CHM13v2.0
Iba57
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,046,194 - 59,055,391 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1159,046,195 - 59,054,565 (-)EnsemblGRCm39 Ensembl
GRCm381159,155,368 - 59,164,567 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,155,369 - 59,163,739 (-)EnsemblGRCm38mm10GRCm38
MGSCv371158,968,871 - 58,977,244 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361158,973,628 - 58,979,934 (-)NCBIMGSCv36mm8
Celera1163,920,293 - 63,928,657 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1136.97NCBI
Iba57
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81044,441,579 - 44,450,368 (-)NCBIGRCr8
mRatBN7.21043,942,017 - 43,950,807 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1043,942,017 - 43,950,807 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1048,635,836 - 48,644,626 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01048,126,182 - 48,134,984 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01043,629,787 - 43,638,581 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01045,506,124 - 45,514,909 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1045,504,504 - 45,514,878 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01045,262,185 - 45,270,970 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,460,359 - 45,468,258 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1043,205,311 - 43,214,095 (-)NCBICelera
Cytogenetic Map10q22NCBI
Iba57
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955581286,121 - 289,139 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955581284,488 - 289,225 (-)NCBIChiLan1.0ChiLan1.0
IBA57
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2121,422,975 - 21,441,976 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1121,361,152 - 21,379,283 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01203,566,902 - 203,577,857 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11208,779,281 - 208,788,989 (+)NCBIpanpan1.1PanPan1.1panPan2
IBA57
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.114799,540 - 804,191 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl14800,294 - 801,811 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha14346,341 - 351,480 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.014520,581 - 525,721 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl14520,584 - 525,721 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.114711,400 - 716,539 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.014492,267 - 497,374 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.014478,097 - 483,236 (-)NCBIUU_Cfam_GSD_1.0
Iba57
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721387,708,757 - 87,722,258 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493686449,889 - 63,481 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493686450,033 - 63,540 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IBA57
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl251,276,335 - 51,293,544 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1251,276,352 - 51,287,572 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2253,824,583 - 53,835,808 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IBA57
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1251,531,030 - 1,563,180 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660551,410,077 - 1,443,212 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000002903   ⟹   ENSHGLP00000002849
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624937908,235 - 914,229 (+)Ensembl
RefSeq Acc Id: XM_004874728   ⟹   XP_004874785
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624937908,216 - 914,229 (+)NCBI
RefSeq Acc Id: XM_021252118   ⟹   XP_021107777
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624937908,673 - 914,229 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004874785 (Get FASTA)   NCBI Sequence Viewer  
  XP_021107777 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB18108 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002849
RefSeq Acc Id: XP_004874785   ⟸   XM_004874728
- Peptide Label: isoform X1
- UniProtKB: A0AAX6QI66 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107777   ⟸   XM_021252118
- Peptide Label: isoform X2
- UniProtKB: G5C997 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000002849   ⟸   ENSHGLT00000002903


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002132 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000002903 ENTREZGENE
InterPro TrmE/GcvT_dom1 UniProtKB/TrEMBL
  YgfZ/GcvT UniProtKB/TrEMBL
  YgfZ/GcvT_CS UniProtKB/TrEMBL
NCBI Gene Iba57 ENTREZGENE
PANTHER PTHR22602 UniProtKB/TrEMBL
  TRANSFERASE CAF17, MITOCHONDRIAL-RELATED UniProtKB/TrEMBL
Superfamily-SCOP Folate-binding domain UniProtKB/TrEMBL
UniProt A0AAX6QI66 ENTREZGENE, UniProtKB/TrEMBL
  G5C997 ENTREZGENE, UniProtKB/TrEMBL