IBA57 (iron-sulfur cluster assembly factor IBA57) - Rat Genome Database

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Gene: IBA57 (iron-sulfur cluster assembly factor IBA57) Pan paniscus
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Symbol: IBA57
Name: iron-sulfur cluster assembly factor IBA57
RGD ID: 11710007
Description: PARTICIPATES IN mitochondrial iron-sulfur cluster protein biogenesis pathway; ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 74 (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: IBA57 homolog, iron-sulfur cluster assembly; IBA57, iron-sulfur cluster assembly; IBA57, iron-sulfur cluster assembly homolog; putative transferase CAF17, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2121,422,975 - 21,441,976 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1121,361,152 - 21,379,283 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01203,566,902 - 203,577,857 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11208,779,281 - 208,788,989 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
IBA57
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2121,422,975 - 21,441,976 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1121,361,152 - 21,379,283 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01203,566,902 - 203,577,857 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11208,779,281 - 208,788,989 (+)NCBIpanpan1.1PanPan1.1panPan2
IBA57
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381228,165,804 - 228,182,257 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1228,165,804 - 228,182,257 (+)EnsemblGRCh38hg38GRCh38
GRCh371228,353,505 - 228,369,958 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361226,420,139 - 226,436,581 (+)NCBINCBI36Build 36hg18NCBI36
Celera1201,543,670 - 201,559,968 (+)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1198,868,404 - 198,884,736 (+)NCBIHuRef
CHM1_11229,625,750 - 229,642,264 (+)NCBICHM1_1
T2T-CHM13v2.01227,354,800 - 227,371,041 (+)NCBIT2T-CHM13v2.0
Iba57
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,046,194 - 59,055,391 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1159,046,195 - 59,054,565 (-)EnsemblGRCm39 Ensembl
GRCm381159,155,368 - 59,164,567 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,155,369 - 59,163,739 (-)EnsemblGRCm38mm10GRCm38
MGSCv371158,968,871 - 58,977,244 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361158,973,628 - 58,979,934 (-)NCBIMGSCv36mm8
Celera1163,920,293 - 63,928,657 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1136.97NCBI
Iba57
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81044,441,579 - 44,450,368 (-)NCBIGRCr8
mRatBN7.21043,942,017 - 43,950,807 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1043,942,017 - 43,950,807 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1048,635,836 - 48,644,626 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01048,126,182 - 48,134,984 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01043,629,787 - 43,638,581 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01045,506,124 - 45,514,909 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1045,504,504 - 45,514,878 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01045,262,185 - 45,270,970 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,460,359 - 45,468,258 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1043,205,311 - 43,214,095 (-)NCBICelera
Cytogenetic Map10q22NCBI
Iba57
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955581286,121 - 289,139 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955581284,488 - 289,225 (-)NCBIChiLan1.0ChiLan1.0
IBA57
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.114799,540 - 804,191 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl14800,294 - 801,811 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha14346,341 - 351,480 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.014520,581 - 525,721 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl14520,584 - 525,721 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.114711,400 - 716,539 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.014492,267 - 497,374 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.014478,097 - 483,236 (-)NCBIUU_Cfam_GSD_1.0
Iba57
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721387,708,757 - 87,722,258 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493686449,889 - 63,481 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493686450,033 - 63,540 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IBA57
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl251,276,335 - 51,293,544 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1251,276,352 - 51,287,572 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2253,824,583 - 53,835,808 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IBA57
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1251,531,030 - 1,563,180 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660551,410,077 - 1,443,212 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Iba57
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624937908,235 - 914,229 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624937908,216 - 914,229 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_034948441   ⟹   XP_034804332
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2121,422,975 - 21,441,976 (-)NCBI
NHGRI_mPanPan1121,361,152 - 21,379,283 (-)NCBI
Mhudiblu_PPA_v01203,566,902 - 203,577,857 (+)NCBI
RefSeq Acc Id: XM_034948444   ⟹   XP_034804335
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2121,422,975 - 21,439,530 (-)NCBI
NHGRI_mPanPan1121,361,152 - 21,377,834 (-)NCBI
Mhudiblu_PPA_v01203,572,366 - 203,577,857 (+)NCBI
RefSeq Acc Id: XM_055105090   ⟹   XP_054961065
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2121,422,975 - 21,440,452 (-)NCBI
NHGRI_mPanPan1121,361,152 - 21,378,690 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034804332 (Get FASTA)   NCBI Sequence Viewer  
  XP_034804335 (Get FASTA)   NCBI Sequence Viewer  
  XP_054961065 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_034804332   ⟸   XM_034948441
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034804335   ⟸   XM_034948444
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054961065   ⟸   XM_055105090
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene IBA57 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-29 IBA57  iron-sulfur cluster assembly factor IBA57    IBA57, iron-sulfur cluster assembly  Symbol and/or name change 5135510 APPROVED
2017-12-19 IBA57  IBA57, iron-sulfur cluster assembly    IBA57 homolog, iron-sulfur cluster assembly  Symbol and/or name change 5135510 APPROVED