Trpm1 (transient receptor potential cation channel subfamily M member 1) - Rat Genome Database

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Gene: Trpm1 (transient receptor potential cation channel subfamily M member 1) Heterocephalus glaber
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Symbol: Trpm1
Name: transient receptor potential cation channel subfamily M member 1
RGD ID: 18906534
Description: ENCODES a protein that exhibits monoatomic cation channel activity (ortholog); monoatomic cation transmembrane transporter activity (ortholog); INVOLVED IN calcium ion import across plasma membrane (ortholog); cellular response to light stimulus (ortholog); G protein-coupled glutamate receptor signaling pathway (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 15q13.3 microdeletion syndrome (ortholog); FOUND IN cell tip (ortholog); dendrite (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247681,757,293 - 1,873,627 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247681,802,601 - 1,873,627 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Trpm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247681,757,293 - 1,873,627 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247681,802,601 - 1,873,627 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TRPM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381531,001,065 - 31,161,160 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1531,001,065 - 31,161,160 (-)EnsemblGRCh38hg38GRCh38
GRCh371531,293,268 - 31,453,363 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361529,080,829 - 29,181,216 (-)NCBINCBI36Build 36hg18NCBI36
Build 341529,080,844 - 29,181,216NCBI
Celera159,019,006 - 9,119,394 (-)NCBICelera
Cytogenetic Map15q13.3NCBI
HuRef158,470,226 - 8,630,487 (-)NCBIHuRef
CHM1_11531,284,115 - 31,444,331 (-)NCBICHM1_1
T2T-CHM13v2.01528,795,157 - 28,955,270 (-)NCBIT2T-CHM13v2.0
Trpm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39763,803,583 - 63,923,630 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl763,803,583 - 63,919,523 (+)EnsemblGRCm39 Ensembl
GRCm38764,153,835 - 64,269,772 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl764,153,835 - 64,269,775 (+)EnsemblGRCm38mm10GRCm38
MGSCv37771,298,721 - 71,414,658 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36764,032,878 - 64,148,722 (+)NCBIMGSCv36mm8
Celera761,596,535 - 61,712,952 (+)NCBICelera
Cytogenetic Map7CNCBI
cM Map734.61NCBI
Trpm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81127,130,686 - 127,247,219 (+)NCBIGRCr8
mRatBN7.21117,718,896 - 117,835,434 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1117,718,896 - 117,834,605 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1125,693,996 - 125,809,613 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01132,876,553 - 132,992,162 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01125,707,003 - 125,822,518 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01124,983,391 - 125,101,759 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1124,983,452 - 125,099,573 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01126,092,991 - 126,210,809 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41118,583,516 - 118,700,653 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1109,974,992 - 110,090,741 (+)NCBICelera
Cytogenetic Map1q22NCBI
Trpm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541629,814,077 - 29,939,344 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541629,846,374 - 29,880,922 (-)NCBIChiLan1.0ChiLan1.0
TRPM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21619,808,237 - 19,886,134 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11524,532,668 - 24,693,365 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0159,492,500 - 9,653,644 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11528,530,878 - 28,690,947 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1528,530,878 - 28,690,947 (-)Ensemblpanpan1.1panPan2
TRPM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1337,860,730 - 37,949,108 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl337,817,339 - 37,949,108 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha340,503,547 - 40,626,849 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0338,199,294 - 38,329,018 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl338,191,370 - 38,329,018 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1337,731,034 - 37,854,661 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0337,984,595 - 38,114,581 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0338,194,873 - 38,318,556 (+)NCBIUU_Cfam_GSD_1.0
Trpm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640145,477,644 - 145,610,678 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936483724,018 - 858,855 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936483723,784 - 856,839 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1143,709,864 - 143,855,984 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11143,718,295 - 143,856,968 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21159,663,385 - 159,801,269 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRPM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12651,560,992 - 51,660,857 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2651,586,041 - 51,660,171 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604889,165,059 - 89,239,923 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021264732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01047783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000011411   ⟹   ENSHGLP00000011285
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247681,757,293 - 1,873,627 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000011412   ⟹   ENSHGLP00000011286
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247681,810,016 - 1,831,116 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000011413   ⟹   ENSHGLP00000011287
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247681,811,676 - 1,826,112 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000011414   ⟹   ENSHGLP00000011288
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247681,826,895 - 1,873,627 (+)Ensembl
RefSeq Acc Id: XM_021264732   ⟹   XP_021120391
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247681,802,601 - 1,873,627 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021120391 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000011285
RefSeq Acc Id: XP_021120391   ⟸   XM_021264732
- UniProtKB: G5B6H9 (UniProtKB/TrEMBL),   A0AAX6TEV5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000011286   ⟸   ENSHGLT00000011412
Ensembl Acc Id: ENSHGLP00000011287   ⟸   ENSHGLT00000011413
Ensembl Acc Id: ENSHGLP00000011288   ⟸   ENSHGLT00000011414
Ensembl Acc Id: ENSHGLP00000011285   ⟸   ENSHGLT00000011411


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008099 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000011411 ENTREZGENE
Gene3D-CATH TRPM, tetramerisation domain UniProtKB/TrEMBL
InterPro Ion_trans_dom UniProtKB/TrEMBL
  TRPM UniProtKB/TrEMBL
  TRPM_SLOG UniProtKB/TrEMBL
  TRPM_tetra UniProtKB/TrEMBL
  TRPM_tetra_sf UniProtKB/TrEMBL
NCBI Gene Trpm1 ENTREZGENE
PANTHER TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL SUBFAMILY M MEMBER 1 UniProtKB/TrEMBL
  TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 UniProtKB/TrEMBL
Pfam Ion_trans UniProtKB/TrEMBL
  LSDAT_euk UniProtKB/TrEMBL
  TRPM_tetra UniProtKB/TrEMBL
UniProt A0AAX6TEV5 ENTREZGENE, UniProtKB/TrEMBL
  G5B6H9 ENTREZGENE, UniProtKB/TrEMBL