Ccnh (cyclin H) - Rat Genome Database

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Gene: Ccnh (cyclin H) Heterocephalus glaber
Analyze
Symbol: Ccnh
Name: cyclin H
RGD ID: 18906293
Description: ENCODES a protein that exhibits kinase activity (ortholog); RNA polymerase II general transcription initiation factor activity (ortholog); INVOLVED IN protein stabilization (ortholog); regulation of G1/S transition of mitotic cell cycle (ortholog); transcription initiation at RNA polymerase II promoter (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); basal cell carcinoma (ortholog); Breast Neoplasms (ortholog); FOUND IN CAK-ERCC2 complex (ortholog); cyclin-dependent protein kinase holoenzyme complex (ortholog); male germ cell nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Cyclin-H
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247436,883,114 - 6,902,745 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247436,883,124 - 6,902,518 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ccnh
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247436,883,114 - 6,902,745 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247436,883,124 - 6,902,518 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CCNH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38587,311,471 - 87,412,930 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl587,318,416 - 87,413,029 (-)EnsemblGRCh38hg38GRCh38
GRCh37586,607,288 - 86,708,747 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36586,725,838 - 86,744,592 (-)NCBINCBI36Build 36hg18NCBI36
Build 34586,725,838 - 86,744,592NCBI
Celera582,582,332 - 82,601,086 (-)NCBICelera
Cytogenetic Map5q14.3NCBI
HuRef581,894,247 - 81,913,020 (-)NCBIHuRef
CHM1_1586,123,107 - 86,141,878 (-)NCBICHM1_1
T2T-CHM13v2.0587,789,500 - 87,894,036 (-)NCBIT2T-CHM13v2.0
Ccnh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391385,337,504 - 85,361,850 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1385,337,527 - 85,371,588 (+)EnsemblGRCm39 Ensembl
GRCm381385,189,377 - 85,213,731 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1385,189,408 - 85,223,469 (+)EnsemblGRCm38mm10GRCm38
MGSCv371385,329,082 - 85,353,328 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361385,662,587 - 85,686,833 (+)NCBIMGSCv36mm8
Celera1387,421,607 - 87,445,967 (+)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1345.05NCBI
Ccnh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8217,570,449 - 17,591,078 (+)NCBIGRCr8
mRatBN7.2215,835,064 - 15,855,648 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl215,834,833 - 15,855,819 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx222,936,030 - 22,956,622 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0221,036,283 - 21,056,875 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0215,710,083 - 15,730,675 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0213,593,100 - 13,613,910 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl213,593,100 - 13,613,910 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0213,446,659 - 13,467,469 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4214,179,894 - 14,200,704 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1214,100,262 - 14,121,073 (+)NCBI
Celera212,100,804 - 12,121,614 (+)NCBICelera
Cytogenetic Map2q11NCBI
Ccnh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541823,790,001 - 23,807,702 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541823,790,398 - 23,807,509 (+)NCBIChiLan1.0ChiLan1.0
CCNH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2427,982,412 - 28,019,369 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1526,136,039 - 26,172,992 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0527,958,859 - 27,995,815 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1528,094,064 - 28,131,166 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl528,094,064 - 28,116,149 (+)Ensemblpanpan1.1panPan2
CCNH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1321,046,477 - 21,067,305 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl321,046,472 - 21,178,315 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha322,412,153 - 22,431,889 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0320,955,126 - 20,974,862 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl320,955,145 - 20,976,993 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1320,926,297 - 20,945,993 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0320,888,786 - 20,908,786 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0321,180,551 - 21,200,143 (+)NCBIUU_Cfam_GSD_1.0
Ccnh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213176,673,557 - 176,690,580 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364695,935,131 - 5,952,460 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364695,933,163 - 5,952,190 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl294,980,941 - 95,018,634 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1294,980,938 - 95,019,053 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2297,505,024 - 97,539,020 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCNH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1481,373,812 - 81,392,454 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl481,373,994 - 81,392,326 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604930,376,461 - 30,412,792 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000010963   ⟹   ENSHGLP00000010841
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247436,883,114 - 6,902,745 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000010964   ⟹   ENSHGLP00000010842
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247436,883,114 - 6,902,745 (-)Ensembl
RefSeq Acc Id: XM_004841654   ⟹   XP_004841711
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247436,884,769 - 6,902,518 (-)NCBI
RefSeq Acc Id: XM_013071090   ⟹   XP_012926544
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247436,883,124 - 6,902,518 (-)NCBI
RefSeq Acc Id: XM_013071091   ⟹   XP_012926545
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247436,883,124 - 6,902,518 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004841711 (Get FASTA)   NCBI Sequence Viewer  
  XP_012926544 (Get FASTA)   NCBI Sequence Viewer  
  XP_012926545 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB00238 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000010841
  ENSHGLP00000010842
GenBank Protein JAN98248 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_012926545   ⟸   XM_013071091
- Peptide Label: isoform X2
- UniProtKB: A0AAX6QTR5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012926544   ⟸   XM_013071090
- Peptide Label: isoform X1
- UniProtKB: A0AAX6QT20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004841711   ⟸   XM_004841654
- Peptide Label: isoform X3
- UniProtKB: G5AT77 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000010842   ⟸   ENSHGLT00000010964
Ensembl Acc Id: ENSHGLP00000010841   ⟸   ENSHGLT00000010963


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007779 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000010963 ENTREZGENE
  ENSHGLT00000010964 ENTREZGENE
Gene3D-CATH Cyclin-like UniProtKB/TrEMBL
InterPro Cyclin-like UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin/Ssn8 UniProtKB/TrEMBL
  Cyclin_C_2 UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
  CyclinH/Ccl1 UniProtKB/TrEMBL
KEGG Report hgl:101714118 UniProtKB/TrEMBL
NCBI Gene Ccnh ENTREZGENE
PANTHER PTHR10026 UniProtKB/TrEMBL
Pfam Cyclin_C_2 UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/TrEMBL
UniProt A0AAX6QT20 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QTR5 ENTREZGENE, UniProtKB/TrEMBL
  G5AT77 ENTREZGENE, UniProtKB/TrEMBL