Ccnh (cyclin H) - Rat Genome Database

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Gene: Ccnh (cyclin H) Chinchilla lanigera
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Symbol: Ccnh
Name: cyclin H
RGD ID: 9059206
Description: ENCODES a protein that exhibits cyclin-dependent protein serine/threonine kinase regulator activity (ortholog); kinase activity (ortholog); RNA polymerase II general transcription initiation factor activity (ortholog); INVOLVED IN positive regulation of meiotic cell cycle process involved in oocyte maturation (ortholog); protein stabilization (ortholog); regulation of cyclin-dependent protein serine/threonine kinase activity (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); basal cell carcinoma (ortholog); Breast Neoplasms (ortholog); FOUND IN CAK-ERCC2 complex (ortholog); cyclin-dependent protein kinase activating kinase holoenzyme complex (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cyclin-H
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541823,790,001 - 23,807,702 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541823,790,398 - 23,807,509 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Ccnh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541823,790,001 - 23,807,702 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541823,790,398 - 23,807,509 (+)NCBIChiLan1.0ChiLan1.0
CCNH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl587,318,416 - 87,412,930 (-)EnsemblGRCh38hg38GRCh38
GRCh38587,311,471 - 87,412,971 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37586,607,288 - 86,708,747 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36586,725,838 - 86,744,592 (-)NCBINCBI36hg18NCBI36
Build 34586,725,838 - 86,744,592NCBI
Celera582,582,332 - 82,601,086 (-)NCBI
Cytogenetic Map5q14.3NCBI
HuRef581,894,247 - 81,913,020 (-)NCBIHuRef
CHM1_1586,123,107 - 86,141,878 (-)NCBICHM1_1
Ccnh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391385,337,504 - 85,361,850 (+)NCBIGRCm39mm39
GRCm39 Ensembl1385,337,527 - 85,371,588 (+)Ensembl
GRCm381385,189,377 - 85,213,731 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1385,189,408 - 85,223,469 (+)EnsemblGRCm38mm10GRCm38
MGSCv371385,329,082 - 85,353,328 (+)NCBIGRCm37mm9NCBIm37
MGSCv361385,662,587 - 85,686,833 (+)NCBImm8
Celera1387,421,607 - 87,445,967 (+)NCBICelera
Cytogenetic Map13C3NCBI
Ccnh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2215,834,833 - 15,855,643 (+)NCBI
Rnor_6.0 Ensembl213,593,100 - 13,613,910 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0213,593,100 - 13,613,910 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0213,446,659 - 13,467,469 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4214,179,894 - 14,200,704 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1214,100,262 - 14,121,073 (+)NCBI
Celera212,100,804 - 12,121,614 (+)NCBICelera
Cytogenetic Map2q11NCBI
CCNH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1528,094,064 - 28,131,166 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl528,094,064 - 28,116,149 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0527,958,859 - 27,995,815 (+)NCBIMhudiblu_PPA_v0panPan3
CCNH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1321,046,477 - 21,067,305 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl321,046,472 - 21,178,315 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha322,412,153 - 22,431,889 (+)NCBI
ROS_Cfam_1.0320,955,126 - 20,974,862 (+)NCBI
UMICH_Zoey_3.1320,926,297 - 20,945,993 (+)NCBI
UNSW_CanFamBas_1.0320,888,786 - 20,908,786 (+)NCBI
UU_Cfam_GSD_1.0321,180,551 - 21,200,143 (+)NCBI
Ccnh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213176,673,557 - 176,690,580 (+)NCBI
SpeTri2.0NW_0049364695,933,163 - 5,952,190 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl294,980,940 - 95,018,726 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1294,980,938 - 95,019,053 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2297,505,024 - 97,539,020 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCNH
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1481,373,812 - 81,392,454 (-)NCBI
ChlSab1.1 Ensembl481,373,994 - 81,392,326 (-)Ensembl
Ccnh
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247436,883,124 - 6,902,518 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000005753   ⟹   ENSCLAP00000005652
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541823,790,001 - 23,807,702 (+)Ensembl
RefSeq Acc Id: XM_005382297   ⟹   XP_005382354
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541823,790,398 - 23,807,509 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005382354 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005382354   ⟸   XM_005382297
- Sequence:
RefSeq Acc Id: ENSCLAP00000005652   ⟸   ENSCLAT00000005753


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004012 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000005652 ENTREZGENE
Ensembl Transcript ENSCLAT00000005753 ENTREZGENE
NCBI Gene Ccnh ENTREZGENE