Filip1l (filamin A interacting protein 1 like) - Rat Genome Database

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Gene: Filip1l (filamin A interacting protein 1 like) Heterocephalus glaber
Analyze
Symbol: Filip1l
Name: filamin A interacting protein 1 like
RGD ID: 18906235
Description: INVOLVED IN gene expression (ortholog); hindgut development (ortholog); proteasomal protein catabolic process (ortholog); FOUND IN centrosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: filamin A-interacting protein 1-like; Filamin A-interacting protein 1-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478913,188,588 - 13,492,823 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centrosome  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Filip1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478913,188,588 - 13,492,823 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FILIP1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38399,828,811 - 100,114,501 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl399,828,811 - 100,114,513 (-)EnsemblGRCh38hg38GRCh38
GRCh37399,547,655 - 99,833,345 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363101,034,678 - 101,316,039 (-)NCBINCBI36Build 36hg18NCBI36
Celera397,942,485 - 98,223,977 (-)NCBICelera
Cytogenetic Map3q12.1NCBI
HuRef396,920,239 - 97,201,792 (-)NCBIHuRef
CHM1_1399,515,018 - 99,796,400 (-)NCBICHM1_1
T2T-CHM13v2.03102,533,856 - 102,819,829 (-)NCBIT2T-CHM13v2.0
Filip1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391657,173,376 - 57,393,167 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1657,173,456 - 57,393,489 (+)EnsemblGRCm39 Ensembl
GRCm381657,353,277 - 57,572,804 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1657,353,093 - 57,573,126 (+)EnsemblGRCm38mm10GRCm38
MGSCv371657,353,390 - 57,572,917 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361657,274,635 - 57,495,076 (+)NCBIMGSCv36mm8
Celera1657,679,629 - 57,898,970 (+)NCBICelera
Cytogenetic Map16C1.1NCBI
cM Map1634.22NCBI
Filip1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81156,403,467 - 56,646,422 (-)NCBIGRCr8
mRatBN7.21142,937,353 - 43,177,085 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1142,940,467 - 43,177,415 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01145,039,488 - 45,275,141 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1145,039,461 - 45,124,423 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01148,252,744 - 48,470,833 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41143,788,676 - 43,859,932 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1142,737,152 - 42,971,618 (-)NCBICelera
Cytogenetic Map11q12NCBI
Filip1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554271,365,112 - 1,471,901 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554271,386,163 - 1,641,985 (-)NCBIChiLan1.0ChiLan1.0
FILIP1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2297,769,602 - 97,876,774 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1397,774,386 - 97,881,597 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0396,941,501 - 97,207,743 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13103,609,631 - 103,890,638 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3103,609,631 - 103,707,488 (-)Ensemblpanpan1.1panPan2
FILIP1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1336,449,932 - 6,745,186 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl336,453,854 - 6,744,896 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha336,606,440 - 6,900,762 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0336,589,197 - 6,883,758 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl336,597,029 - 6,883,475 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1336,474,108 - 6,771,924 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0336,524,843 - 6,819,493 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0336,851,192 - 7,149,431 (-)NCBIUU_Cfam_GSD_1.0
Filip1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602150,265,282 - 150,526,111 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366303,326,294 - 3,406,247 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366303,162,654 - 3,426,337 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FILIP1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13158,890,433 - 159,185,774 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113158,889,362 - 159,187,491 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213168,935,647 - 168,939,003 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FILIP1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12280,959,751 - 81,044,074 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2280,960,261 - 81,065,200 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604185,513,486 - 85,615,015 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004857960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004857961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004857962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021238772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021238773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002387118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01064562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01064563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01064564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01064565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01064566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01064567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01064568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01064569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01064570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01064571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01064572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01064573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01064574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH170066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_004857960   ⟹   XP_004858017
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478913,188,588 - 13,492,823 (-)NCBI
RefSeq Acc Id: XM_004857961   ⟹   XP_004858018
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478913,188,588 - 13,215,798 (-)NCBI
RefSeq Acc Id: XM_004857962   ⟹   XP_004858019
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478913,188,588 - 13,215,832 (-)NCBI
RefSeq Acc Id: XM_021238772   ⟹   XP_021094431
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478913,188,588 - 13,215,798 (-)NCBI
RefSeq Acc Id: XM_021238773   ⟹   XP_021094432
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478913,188,588 - 13,209,234 (-)NCBI
RefSeq Acc Id: XR_002387118
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478913,212,279 - 13,215,809 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004858017 (Get FASTA)   NCBI Sequence Viewer  
  XP_004858018 (Get FASTA)   NCBI Sequence Viewer  
  XP_004858019 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094431 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094432 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB08237 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000027581
RefSeq Acc Id: XP_004858017   ⟸   XM_004857960
- Peptide Label: isoform X1
- UniProtKB: G5BG26 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004858019   ⟸   XM_004857962
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004858018   ⟸   XM_004857961
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021094431   ⟸   XM_021238772
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021094432   ⟸   XM_021238773
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019614 ENTREZGENE
Ensembl Transcript ENSHGLT00000027824 ENTREZGENE
Gene3D-CATH 1.20.5.1700 UniProtKB/TrEMBL
InterPro Cortactin-Actin_Reg UniProtKB/TrEMBL
  Cortactin-binding_p2_N UniProtKB/TrEMBL
NCBI Gene Filip1l ENTREZGENE
PANTHER FILAMIN A-INTERACTING PROTEIN 1-LIKE UniProtKB/TrEMBL
  FILAMIN/GPBP-INTERACTING PROTEIN UniProtKB/TrEMBL
Pfam CortBP2 UniProtKB/TrEMBL
UniProt A0AAX6PSZ3_HETGA UniProtKB/TrEMBL
  A0AAX6RCD4_HETGA UniProtKB/TrEMBL
  G5BG26 ENTREZGENE, UniProtKB/TrEMBL