Filip1l (filamin A interacting protein 1-like) - Rat Genome Database
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Gene: Filip1l (filamin A interacting protein 1-like) Rattus norvegicus
Analyze
Symbol: Filip1l
Name: filamin A interacting protein 1-like
RGD ID: 1565927
Description: Orthologous to human FILIP1L (filamin A interacting protein 1 like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: MODEL
Also known as: filamin A-interacting protein 1-like; LOC304020; RGD1565927; similar to 4631422O05Rik protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21142,937,353 - 43,177,085 (-)NCBI
Rnor_6.0 Ensembl1145,039,461 - 45,124,423 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01145,039,488 - 45,275,141 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01148,252,744 - 48,470,833 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41143,788,676 - 43,859,932 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1142,737,152 - 42,971,618 (-)NCBICelera
Cytogenetic Map11q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
5-fluorouracil  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ampicillin  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
avobenzone  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bucladesine  (ISO)
cadmium dichloride  (EXP)
caffeine  (EXP)
calcitriol  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
DDT  (EXP)
dibutyl phthalate  (EXP,ISO)
dichloromethane  (ISO)
diethylstilbestrol  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
ethylbenzene  (ISO)
hydrogen peroxide  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
medroxyprogesterone acetate  (ISO)
methapyrilene  (ISO)
methoxyacetic acid  (EXP)
methylmercury chloride  (EXP,ISO)
Monobutylphthalate  (EXP)
N-acetyl-L-cysteine  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel sulfate  (ISO)
O-methyleugenol  (ISO)
o-xylene  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
quinolin-8-ol  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
toluene  (EXP,ISO)
topotecan  (EXP)
trichloroethene  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
valsartan  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References


Genomics

Comparative Map Data
Filip1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21142,937,353 - 43,177,085 (-)NCBI
Rnor_6.0 Ensembl1145,039,461 - 45,124,423 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01145,039,488 - 45,275,141 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01148,252,744 - 48,470,833 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41143,788,676 - 43,859,932 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1142,737,152 - 42,971,618 (-)NCBICelera
Cytogenetic Map11q12NCBI
FILIP1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl399,830,141 - 100,114,513 (-)EnsemblGRCh38hg38GRCh38
GRCh38399,828,811 - 100,114,501 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37399,547,655 - 99,833,345 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363101,034,678 - 101,316,039 (-)NCBINCBI36hg18NCBI36
Celera397,942,485 - 98,223,977 (-)NCBI
Cytogenetic Map3q12.1NCBI
HuRef396,920,239 - 97,201,792 (-)NCBIHuRef
CHM1_1399,515,018 - 99,796,408 (-)NCBICHM1_1
Filip1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391657,173,640 - 57,393,167 (+)NCBIGRCm39mm39
GRCm39 Ensembl1657,173,456 - 57,393,489 (+)Ensembl
GRCm381657,353,277 - 57,572,804 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1657,353,093 - 57,573,126 (+)EnsemblGRCm38mm10GRCm38
MGSCv371657,353,390 - 57,572,917 (+)NCBIGRCm37mm9NCBIm37
MGSCv361657,274,635 - 57,495,076 (+)NCBImm8
Celera1657,679,629 - 57,898,970 (+)NCBICelera
Cytogenetic Map16C1.1NCBI
Filip1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554271,365,112 - 1,471,901 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554271,386,163 - 1,641,985 (-)NCBIChiLan1.0ChiLan1.0
FILIP1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13103,609,631 - 103,890,638 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3103,609,631 - 103,707,488 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0396,941,501 - 97,207,743 (-)NCBIMhudiblu_PPA_v0panPan3
FILIP1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl336,453,854 - 6,744,896 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1336,449,932 - 6,745,186 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Filip1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366303,162,654 - 3,426,337 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FILIP1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13158,890,380 - 159,191,761 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113158,889,362 - 159,187,491 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213168,935,647 - 168,939,003 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FILIP1L
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12280,959,751 - 81,044,074 (+)NCBI
ChlSab1.1 Ensembl2280,960,261 - 81,065,200 (+)Ensembl
Filip1l
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478913,188,588 - 13,492,823 (-)NCBI

Position Markers
D11Got38  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01145,075,378 - 45,075,627NCBIRnor6.0
Rnor_5.01148,271,341 - 48,271,590UniSTSRnor5.0
RH 3.4 Map11325.9RGD
RH 3.4 Map11325.9UniSTS
RH 2.0 Map11290.5RGD
Cytogenetic Map11q12UniSTS
D11Got41  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01145,248,275 - 45,248,487NCBIRnor6.0
Rnor_6.01145,597,574 - 45,597,786NCBIRnor6.0
Rnor_5.01148,786,968 - 48,787,180UniSTSRnor5.0
Rnor_5.01148,443,978 - 48,444,190UniSTSRnor5.0
RGSC_v3.41143,984,975 - 43,985,187RGDRGSC3.4
RGSC_v3.41143,984,975 - 43,985,187UniSTSRGSC3.4
RGSC_v3.11144,042,564 - 44,042,776RGD
Celera1142,944,755 - 42,944,967UniSTS
RH 3.4 Map11319.2RGD
RH 3.4 Map11319.2UniSTS
RH 2.0 Map11306.8RGD
Cytogenetic Map11q12UniSTS
D11Uwm2  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01145,075,357 - 45,075,498NCBIRnor6.0
Rnor_5.01148,271,320 - 48,271,461UniSTSRnor5.0
Cytogenetic Map11q12UniSTS
BE110684  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01145,190,571 - 45,190,667NCBIRnor6.0
Rnor_5.01148,386,274 - 48,386,370UniSTSRnor5.0
RGSC_v3.41143,926,947 - 43,927,043UniSTSRGSC3.4
Celera1142,886,985 - 42,887,081UniSTS
RH 3.4 Map11320.8UniSTS
Cytogenetic Map11q12UniSTS
BI293688  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01145,091,379 - 45,091,563NCBIRnor6.0
Rnor_5.01148,287,082 - 48,287,266UniSTSRnor5.0
RGSC_v3.41143,827,085 - 43,827,269UniSTSRGSC3.4
Celera1142,788,776 - 42,788,960UniSTS
RH 3.4 Map11330.8UniSTS
Cytogenetic Map11q12UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11172720192Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)1132503169342559Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11935127454351274Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111632197346583360Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111901627290463843Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)111947517979734728Rat
1598811Bp291Blood pressure QTL 2911.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)112194422966944229Rat
1598841Memor7Memory QTL 7exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)112194422966944229Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112540112970401129Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112572003870720038Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112572003870720038Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112572003870720038Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112572003870720038Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112831466586994795Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)113043533963186373Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)113043533986714631Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113215552082443118Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113590063480900634Rat
11528648Bss118Bone structure and strength QTL 1186.6580.00000022femur strength trait (VT:0010010)femur ultimate displacement (CMO:0002719)114278472545474665Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114309033886714631Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)114444434769649708Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:30
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000046383
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 42 4 15 8 10 19 37 11 8
Low 1 53 41 4 41 1 74 16 4
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000046383   ⟹   ENSRNOP00000045927
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1145,039,461 - 45,124,423 (-)Ensembl
RefSeq Acc Id: XM_006221096   ⟹   XP_006221158
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1142,737,152 - 42,780,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248213   ⟹   XP_006248275
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01145,039,488 - 45,083,424 (-)NCBI
Rnor_5.01148,252,744 - 48,470,833 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768652   ⟹   XP_008766874
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01145,039,488 - 45,126,448 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768657   ⟹   XP_008766879
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01145,039,488 - 45,092,622 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008776552   ⟹   XP_008774774
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1142,737,152 - 42,823,837 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008776557   ⟹   XP_008774779
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1142,737,152 - 42,790,019 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598110   ⟹   XP_017453599
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01145,039,488 - 45,126,449 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598111   ⟹   XP_017453600
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01145,039,488 - 45,128,876 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598112   ⟹   XP_017453601
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21142,937,353 - 43,177,085 (-)NCBI
Rnor_6.01145,039,488 - 45,275,141 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598113   ⟹   XP_017453602
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01145,039,488 - 45,145,095 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598114   ⟹   XP_017453603
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01145,039,709 - 45,126,449 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598115   ⟹   XP_017453604
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01145,039,488 - 45,067,447 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017604299   ⟹   XP_017459788
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1142,737,152 - 42,823,838 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017604300   ⟹   XP_017459789
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1142,737,152 - 42,826,264 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017604301   ⟹   XP_017459790
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1142,737,152 - 42,971,618 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017604302   ⟹   XP_017459791
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1142,737,152 - 42,842,303 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017604303   ⟹   XP_017459792
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1142,737,373 - 42,823,838 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017604304   ⟹   XP_017459793
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1142,737,152 - 42,765,098 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088830   ⟹   XP_038944758
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21142,942,546 - 43,177,085 (-)NCBI
RefSeq Acc Id: XM_039088831   ⟹   XP_038944759
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21142,942,434 - 43,177,085 (-)NCBI
RefSeq Acc Id: XM_039088832   ⟹   XP_038944760
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21142,959,542 - 43,177,085 (-)NCBI
RefSeq Acc Id: XM_039088833   ⟹   XP_038944761
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21142,959,542 - 43,177,085 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_006221158   ⟸   XM_006221096
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006248275   ⟸   XM_006248213
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008774774   ⟸   XM_008776552
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008774779   ⟸   XM_008776557
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008766874   ⟸   XM_008768652
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008766879   ⟸   XM_008768657
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017459790   ⟸   XM_017604301
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017459791   ⟸   XM_017604302
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017459789   ⟸   XM_017604300
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017459788   ⟸   XM_017604299
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017459793   ⟸   XM_017604304
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017459792   ⟸   XM_017604303
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017453601   ⟸   XM_017598112
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017453602   ⟸   XM_017598113
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017453600   ⟸   XM_017598111
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017453599   ⟸   XM_017598110
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017453604   ⟸   XM_017598115
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017453603   ⟸   XM_017598114
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000045927   ⟸   ENSRNOT00000046383
RefSeq Acc Id: XP_038944759   ⟸   XM_039088831
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038944758   ⟸   XM_039088830
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038944761   ⟸   XM_039088833
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038944760   ⟸   XM_039088832
- Peptide Label: isoform X4
Protein Domains
CortBP2

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565927 AgrOrtholog
Ensembl Genes ENSRNOG00000001645 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000045927 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000046383 UniProtKB/TrEMBL
InterPro Cortactin-binding_protein-2_N UniProtKB/TrEMBL
NCBI Gene 304020 ENTREZGENE
Pfam CortBP2 UniProtKB/TrEMBL
PhenoGen Filip1l PhenoGen
UniProt D4A900_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-05-25 Filip1l   filamin A interacting protein 1-like   RGD1565927  similar to 4631422O05Rik protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1565927  similar to 4631422O05Rik protein   RGD1565927_predicted  similar to 4631422O05Rik protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565927_predicted  similar to 4631422O05Rik protein (predicted)  LOC304020  similar to 4631422O05Rik protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC304020  similar to 4631422O05Rik protein      Symbol and Name status set to provisional 70820 PROVISIONAL