Lmntd1 (lamin tail domain containing 1) - Rat Genome Database

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Gene: Lmntd1 (lamin tail domain containing 1) Heterocephalus glaber
Analyze
Symbol: Lmntd1
Name: lamin tail domain containing 1
RGD ID: 18906118
Description: INVOLVED IN cell population proliferation (ortholog); ASSOCIATED WITH Lung Neoplasms (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Ifltd1; intermediate filament tail domain containing 1; lamin tail domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475213,553,556 - 13,632,818 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475213,553,599 - 13,607,870 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Lmntd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475213,553,556 - 13,632,818 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475213,553,599 - 13,607,870 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
LMNTD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381225,476,082 - 25,648,578 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1225,409,307 - 25,648,579 (-)EnsemblGRCh38hg38GRCh38
GRCh371225,629,016 - 25,801,512 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361225,520,283 - 25,597,445 (-)NCBINCBI36Build 36hg18NCBI36
Celera1230,775,975 - 30,947,972 (-)NCBICelera
Cytogenetic Map12p12.1NCBI
HuRef1225,400,453 - 25,572,229 (-)NCBIHuRef
CHM1_11225,594,063 - 25,766,532 (-)NCBICHM1_1
T2T-CHM13v2.01225,349,099 - 25,521,179 (-)NCBIT2T-CHM13v2.0
Lmntd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396145,311,619 - 145,560,045 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6145,310,860 - 145,560,045 (-)EnsemblGRCm39 Ensembl
GRCm386145,389,314 - 145,450,767 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6145,365,134 - 145,614,319 (-)EnsemblGRCm38mm10GRCm38
MGSCv376145,345,755 - 145,383,445 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366145,354,394 - 145,392,084 (-)NCBIMGSCv36mm8
Celera6148,465,890 - 148,503,902 (-)NCBICelera
Cytogenetic Map6G3NCBI
cM Map677.37NCBI
Lmntd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84180,085,128 - 180,319,362 (-)NCBIGRCr8
mRatBN7.24178,354,302 - 178,588,483 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4178,354,137 - 178,588,477 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4184,664,023 - 184,694,910 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04180,448,521 - 180,479,409 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04179,068,943 - 179,099,831 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04179,658,348 - 179,905,049 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4179,651,164 - 179,904,844 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04243,831,585 - 244,092,860 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44183,044,223 - 183,077,661 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4166,881,530 - 166,913,079 (-)NCBICelera
Cytogenetic Map4q44NCBI
Lmntd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541320,508,574 - 20,771,188 (-)NCBIChiLan1.0ChiLan1.0
LMNTD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21071,271,915 - 71,352,040 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11271,269,308 - 71,348,436 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01260,769,889 - 60,835,765 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11263,287,943 - 63,452,305 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1263,287,954 - 63,452,305 (+)Ensemblpanpan1.1panPan2
LMNTD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12722,029,896 - 22,079,824 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2721,736,630 - 22,079,823 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2724,294,995 - 24,348,936 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02722,227,365 - 22,277,508 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2722,098,283 - 22,277,755 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12722,038,816 - 22,088,963 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02722,063,479 - 22,112,995 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02724,468,435 - 24,518,578 (-)NCBIUU_Cfam_GSD_1.0
Lmntd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494583,614,443 - 83,949,278 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365481,784,651 - 1,871,221 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365481,784,693 - 1,870,847 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LMNTD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl547,848,084 - 48,312,305 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1547,842,173 - 48,399,901 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2551,786,081 - 51,974,712 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LMNTD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11125,226,310 - 25,402,044 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1125,272,782 - 25,303,330 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660699,712,023 - 9,869,359 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000007665   ⟹   ENSHGLP00000007579
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475213,553,556 - 13,632,818 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000007666   ⟹   ENSHGLP00000007580
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475213,553,556 - 13,608,628 (+)Ensembl
RefSeq Acc Id: XM_021259074   ⟹   XP_021114733
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475213,553,599 - 13,607,870 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021114733 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000007580
RefSeq Acc Id: XP_021114733   ⟸   XM_021259074
- UniProtKB: G5BQA2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000007579   ⟸   ENSHGLT00000007665
RefSeq Acc Id: ENSHGLP00000007580   ⟸   ENSHGLT00000007666


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005502 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000007666 ENTREZGENE
Gene3D-CATH Lamin Tail domain UniProtKB/TrEMBL
InterPro Lamin_tail_dom UniProtKB/TrEMBL
  Lamin_tail_dom_sf UniProtKB/TrEMBL
  LMNTD1 UniProtKB/TrEMBL
NCBI Gene Lmntd1 ENTREZGENE
PANTHER LAMIN TAIL DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  LAMIN TAIL DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam LTD UniProtKB/TrEMBL
PROSITE LTD UniProtKB/TrEMBL
Superfamily-SCOP Lamin A/C globular tail domain UniProtKB/TrEMBL
UniProt G5BQA2 ENTREZGENE, UniProtKB/TrEMBL