Ppp4r2 (protein phosphatase 4 regulatory subunit 2) - Rat Genome Database

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Gene: Ppp4r2 (protein phosphatase 4 regulatory subunit 2) Heterocephalus glaber
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Symbol: Ppp4r2
Name: protein phosphatase 4 regulatory subunit 2
RGD ID: 18906064
Description: ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); regulation of double-strand break repair (ortholog); regulation of double-strand break repair via homologous recombination (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/threonine-protein phosphatase 4 regulatory subunit 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247737,501,287 - 7,560,597 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247737,501,184 - 7,562,428 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ppp4r2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247737,501,287 - 7,560,597 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247737,501,184 - 7,562,428 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PPP4R2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38372,996,743 - 73,069,198 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl372,996,803 - 73,069,198 (+)EnsemblGRCh38hg38GRCh38
GRCh37373,045,894 - 73,118,349 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36373,128,809 - 73,197,701 (+)NCBINCBI36Build 36hg18NCBI36
Build 34373,128,808 - 73,197,701NCBI
Celera372,980,269 - 73,049,174 (+)NCBICelera
Cytogenetic Map3p13NCBI
HuRef373,049,486 - 73,118,531 (+)NCBIHuRef
CHM1_1372,998,988 - 73,068,366 (+)NCBICHM1_1
T2T-CHM13v2.0373,038,643 - 73,110,702 (+)NCBIT2T-CHM13v2.0
Ppp4r2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396100,810,596 - 100,846,891 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6100,810,583 - 100,846,895 (+)EnsemblGRCm39 Ensembl
GRCm386100,833,620 - 100,869,934 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6100,833,622 - 100,869,934 (+)EnsemblGRCm38mm10GRCm38
MGSCv376100,783,632 - 100,818,711 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366100,799,736 - 100,834,815 (+)NCBIMGSCv36mm8
Celera6102,699,131 - 102,733,808 (+)NCBICelera
Cytogenetic Map6D3NCBI
cM Map646.93NCBI
Ppp4r2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84135,010,919 - 135,051,844 (+)NCBIGRCr8
mRatBN7.24133,454,555 - 133,495,486 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4133,454,555 - 133,495,486 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4138,863,278 - 138,904,185 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04134,644,046 - 134,684,959 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04133,264,682 - 133,305,586 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04133,285,552 - 133,323,755 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4133,285,552 - 133,323,755 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04197,767,067 - 197,805,270 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44135,720,581 - 135,761,507 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14135,965,391 - 136,006,348 (+)NCBI
Celera4122,298,049 - 122,338,902 (+)NCBICelera
Cytogenetic Map4q34NCBI
Ppp4r2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542115,165,363 - 15,220,273 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542115,165,836 - 15,220,509 (-)NCBIChiLan1.0ChiLan1.0
PPP4R2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2272,954,832 - 73,027,137 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1372,959,619 - 73,031,924 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0372,939,529 - 73,012,073 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1374,863,935 - 74,935,446 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl374,835,788 - 74,935,446 (+)Ensemblpanpan1.1panPan2
PPP4R2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12019,116,122 - 19,166,927 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2019,118,124 - 19,167,264 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2019,093,392 - 19,145,730 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02019,149,605 - 19,201,740 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2019,151,362 - 19,201,742 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12018,837,061 - 18,889,180 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02019,178,646 - 19,230,657 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02019,250,023 - 19,302,369 (-)NCBIUU_Cfam_GSD_1.0
Ppp4r2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049423,994,554 - 4,040,642 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366033,987,275 - 4,041,991 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366033,994,594 - 4,041,972 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP4R2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1354,324,998 - 54,378,276 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11354,324,978 - 54,378,277 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103227906
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12233,937,048 - 34,009,354 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2233,937,050 - 34,009,362 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366653935,107 - 45,300 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000003896   ⟹   ENSHGLP00000003838
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247737,501,287 - 7,560,597 (+)Ensembl
RefSeq Acc Id: XM_004854214   ⟹   XP_004854271
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247737,501,186 - 7,562,428 (+)NCBI
RefSeq Acc Id: XM_021266044   ⟹   XP_021121703
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247737,501,184 - 7,562,428 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004854271 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121703 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000003838
  ENSHGLP00100008180
GenBank Protein JAO02838 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021121703   ⟸   XM_021266044
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004854271   ⟸   XM_004854214
- Peptide Label: isoform X2
- UniProtKB: A0A0N8EUS1 (UniProtKB/TrEMBL),   G5AVP4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000003838   ⟸   ENSHGLT00000003896


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002829 Ensembl, ENTREZGENE
  ENSHGLG00100006080 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000003896 ENTREZGENE
  ENSHGLT00100008279 UniProtKB/TrEMBL
InterPro PPP4R2 UniProtKB/TrEMBL
KEGG Report hgl:101726544 UniProtKB/TrEMBL
NCBI Gene Ppp4r2 ENTREZGENE
PANTHER PTHR16487 UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN PHOSPHATASE 4 REGULATORY SUBUNIT 2 UniProtKB/TrEMBL
Pfam PPP4R2 UniProtKB/TrEMBL
UniProt A0A0N8EUS1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6TLA8_HETGA UniProtKB/TrEMBL
  G5AVP4 ENTREZGENE, UniProtKB/TrEMBL