Sntg2 (syntrophin gamma 2) - Rat Genome Database

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Gene: Sntg2 (syntrophin gamma 2) Heterocephalus glaber
Analyze
Symbol: Sntg2
Name: syntrophin gamma 2
RGD ID: 18905805
Description: ENCODES a protein that exhibits neuroligin family protein binding (ortholog); PDZ domain binding (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); High Myopia (ortholog); FOUND IN nucleoplasm (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Gamma-2-syntrophin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248461,966,584 - 2,051,834 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248461,966,577 - 2,051,953 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sntg2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248461,966,584 - 2,051,834 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248461,966,577 - 2,051,953 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SNTG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382950,849 - 1,367,613 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2950,849 - 1,367,613 (+)EnsemblGRCh38hg38GRCh38
GRCh372946,535 - 1,371,385 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362936,555 - 1,253,924 (+)NCBINCBI36Build 36hg18NCBI36
Build 3421,291,271 - 1,350,389NCBI
Celera21,012,573 - 1,421,170 (+)NCBICelera
Cytogenetic Map2p25.3NCBI
HuRef2947,238 - 1,264,560 (+)NCBIHuRef
HuRef21,304,887 - 1,362,945 (+)NCBIHuRef
CHM1_12944,386 - 1,363,779 (+)NCBICHM1_1
T2T-CHM13v2.02950,782 - 1,369,232 (+)NCBIT2T-CHM13v2.0
Sntg2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391230,224,481 - 30,423,424 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1230,224,481 - 30,423,374 (-)EnsemblGRCm39 Ensembl
GRCm381230,174,482 - 30,373,392 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1230,174,482 - 30,373,375 (-)EnsemblGRCm38mm10GRCm38
MGSCv371230,859,422 - 31,058,240 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361230,761,046 - 30,959,380 (-)NCBIMGSCv36mm8
Celera1231,631,444 - 31,829,368 (-)NCBICelera
Cytogenetic Map12A2NCBI
cM Map1213.0NCBI
Sntg2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8652,529,481 - 52,730,972 (-)NCBIGRCr8
mRatBN7.2646,801,893 - 47,003,390 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl646,801,377 - 47,003,372 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx647,106,309 - 47,309,277 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0647,421,180 - 47,624,149 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0646,856,453 - 47,059,438 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0649,123,084 - 49,324,530 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl649,123,084 - 49,324,450 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0657,803,704 - 58,004,714 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4648,059,246 - 48,263,991 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1648,062,892 - 48,267,135 (-)NCBI
Celera646,005,091 - 46,207,417 (-)NCBICelera
Cytogenetic Map6q16NCBI
Sntg2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955487533,711 - 639,074 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955487533,719 - 639,056 (-)NCBIChiLan1.0ChiLan1.0
SNTG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212125,219,585 - 125,628,480 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A125,223,558 - 125,632,457 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A911,002 - 1,317,058 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A1,020,294 - 1,288,408 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A1,020,261 - 1,288,425 (+)Ensemblpanpan1.1panPan2
SNTG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.117682,332 - 764,461 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl17684,358 - 764,467 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha17666,433 - 752,017 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.017736,579 - 822,178 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl17695,307 - 822,195 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.117660,741 - 746,303 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.017680,837 - 766,292 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.017680,879 - 766,396 (+)NCBIUU_Cfam_GSD_1.0
SNTG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114106,304,115 - 106,703,772 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660455,295,384 - 5,689,797 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000002697   ⟹   ENSHGLP00000002644
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248461,966,584 - 2,051,834 (-)Ensembl
RefSeq Acc Id: XM_004868355   ⟹   XP_004868412
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248461,966,577 - 2,051,953 (-)NCBI
RefSeq Acc Id: XM_021247238   ⟹   XP_021102897
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248461,966,577 - 2,051,953 (-)NCBI
RefSeq Acc Id: XM_021247239   ⟹   XP_021102898
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248461,966,577 - 2,051,953 (-)NCBI
RefSeq Acc Id: XM_021247240   ⟹   XP_021102899
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248461,966,577 - 2,018,704 (-)NCBI
RefSeq Acc Id: XM_021247241   ⟹   XP_021102900
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248461,966,577 - 2,015,602 (-)NCBI
RefSeq Acc Id: XM_021247242   ⟹   XP_021102901
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248461,966,577 - 2,024,605 (-)NCBI
RefSeq Acc Id: XP_021102898   ⟸   XM_021247239
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021102897   ⟸   XM_021247238
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004868412   ⟸   XM_004868355
- Peptide Label: isoform X1
- UniProtKB: G5C0Y1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021102901   ⟸   XM_021247242
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021102899   ⟸   XM_021247240
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021102900   ⟸   XM_021247241
- Peptide Label: isoform X4
Ensembl Acc Id: ENSHGLP00000002644   ⟸   ENSHGLT00000002697


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001990 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000002697 ENTREZGENE
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
InterPro PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  Syntrophin UniProtKB/TrEMBL
KEGG Report hgl:101704906 UniProtKB/TrEMBL
NCBI Gene Sntg2 ENTREZGENE
PANTHER GAMMA-2-SYNTROPHIN UniProtKB/TrEMBL
  PTHR10554 UniProtKB/TrEMBL
Pfam PDZ UniProtKB/TrEMBL
  Syntrophin_4th UniProtKB/TrEMBL
PROSITE PDZ UniProtKB/TrEMBL
SMART PDZ UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF50156 UniProtKB/TrEMBL
UniProt G5C0Y1 ENTREZGENE, UniProtKB/TrEMBL