Sntg2 (syntrophin, gamma 2) - Rat Genome Database

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Gene: Sntg2 (syntrophin, gamma 2) Mus musculus
Analyze
Symbol: Sntg2
Name: syntrophin, gamma 2
RGD ID: 1322647
MGI Page MGI
Description: Predicted to enable PDZ domain binding activity and neuroligin family protein binding activity. Predicted to be located in nucleoplasm and plasma membrane. Predicted to be part of dystrophin-associated glycoprotein complex. Is expressed in gut and urinary system. Orthologous to human SNTG2 (syntrophin gamma 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2210008K22Rik; 9530013L23; BB121248; G2SYN; gamma-2-syntrophin; SYN5; syntrophin-5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391230,224,481 - 30,423,424 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1230,224,481 - 30,423,374 (-)EnsemblGRCm39 Ensembl
GRCm381230,174,482 - 30,373,392 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1230,174,482 - 30,373,375 (-)EnsemblGRCm38mm10GRCm38
MGSCv371230,859,422 - 31,058,240 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361230,761,046 - 30,959,380 (-)NCBIMGSCv36mm8
Celera1231,631,444 - 31,829,368 (-)NCBICelera
Cytogenetic Map12A2NCBI
cM Map1213.0NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:16141072   PMID:16141073   PMID:16533813   PMID:16857187   PMID:18287559   PMID:18468998   PMID:21267068   PMID:21677750  
PMID:21873635  


Genomics

Comparative Map Data
Sntg2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391230,224,481 - 30,423,424 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1230,224,481 - 30,423,374 (-)EnsemblGRCm39 Ensembl
GRCm381230,174,482 - 30,373,392 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1230,174,482 - 30,373,375 (-)EnsemblGRCm38mm10GRCm38
MGSCv371230,859,422 - 31,058,240 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361230,761,046 - 30,959,380 (-)NCBIMGSCv36mm8
Celera1231,631,444 - 31,829,368 (-)NCBICelera
Cytogenetic Map12A2NCBI
cM Map1213.0NCBI
SNTG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382950,849 - 1,367,613 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2950,849 - 1,367,613 (+)EnsemblGRCh38hg38GRCh38
GRCh372946,535 - 1,371,385 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362936,555 - 1,253,924 (+)NCBINCBI36Build 36hg18NCBI36
Build 3421,291,271 - 1,350,389NCBI
Celera21,012,573 - 1,421,170 (+)NCBICelera
Cytogenetic Map2p25.3NCBI
HuRef2947,238 - 1,264,560 (+)NCBIHuRef
HuRef21,304,887 - 1,362,945 (+)NCBIHuRef
CHM1_12944,386 - 1,363,779 (+)NCBICHM1_1
T2T-CHM13v2.02950,782 - 1,369,232 (+)NCBIT2T-CHM13v2.0
Sntg2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8652,529,481 - 52,730,972 (-)NCBIGRCr8
mRatBN7.2646,801,893 - 47,003,390 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl646,801,377 - 47,003,372 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx647,106,309 - 47,309,277 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0647,421,180 - 47,624,149 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0646,856,453 - 47,059,438 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0649,123,084 - 49,324,530 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl649,123,084 - 49,324,450 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0657,803,704 - 58,004,714 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4648,059,246 - 48,263,991 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1648,062,892 - 48,267,135 (-)NCBI
Celera646,005,091 - 46,207,417 (-)NCBICelera
Cytogenetic Map6q16NCBI
Sntg2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955487533,711 - 639,074 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955487533,719 - 639,056 (-)NCBIChiLan1.0ChiLan1.0
SNTG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212125,219,585 - 125,628,480 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A125,223,558 - 125,632,457 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A911,002 - 1,317,058 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A1,020,294 - 1,288,408 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A1,020,261 - 1,288,425 (+)Ensemblpanpan1.1panPan2
SNTG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.117682,332 - 764,461 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl17684,358 - 764,467 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha17666,433 - 752,017 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.017736,579 - 822,178 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl17695,307 - 822,195 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.117660,741 - 746,303 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.017680,837 - 766,292 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.017680,879 - 766,396 (+)NCBIUU_Cfam_GSD_1.0
SNTG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114106,304,115 - 106,703,772 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660455,295,384 - 5,689,797 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sntg2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248461,966,584 - 2,051,834 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248461,966,577 - 2,051,953 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sntg2
8317 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2335
Count of miRNA genes:603
Interacting mature miRNAs:764
Transcripts:ENSMUST00000021004, ENSMUST00000125530, ENSMUST00000130062, ENSMUST00000133324, ENSMUST00000142046, ENSMUST00000149710, ENSMUST00000156953
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse
1301925Ath6_matherosclerosis 6 (mouse)Not determined12132758756Mouse
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
12910983Pifs1_mpeptide-induced fatal syndrome 1 (mouse)12130433078Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse

Markers in Region
BB121248  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381230,174,696 - 30,174,775UniSTSGRCm38
GRCm381552,380,916 - 52,380,995UniSTSGRCm38
MGSCv371552,212,471 - 52,212,550UniSTSGRCm37
MGSCv371230,859,561 - 30,859,640UniSTSGRCm37
Celera1553,953,286 - 53,953,365UniSTS
Celera1231,631,583 - 31,631,662UniSTS
Cytogenetic Map12B1UniSTS
Whitehead/MRC_RH12293.8UniSTS
UniSTS:224798  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381230,301,383 - 30,301,457UniSTSGRCm38
MGSCv371230,986,248 - 30,986,322UniSTSGRCm37
Celera1231,752,020 - 31,752,094UniSTS
Cytogenetic Map12B1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001324519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001324520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001324521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_136915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003950053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_872414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC157276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF367760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY098098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000021004   ⟹   ENSMUSP00000021004
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1230,224,482 - 30,423,374 (-)Ensembl
GRCm38.p6 Ensembl1230,174,483 - 30,373,375 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125530
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1230,359,364 - 30,423,342 (-)Ensembl
GRCm38.p6 Ensembl1230,309,365 - 30,373,343 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130062
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1230,245,062 - 30,251,334 (-)Ensembl
GRCm38.p6 Ensembl1230,195,063 - 30,201,335 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133324   ⟹   ENSMUSP00000114245
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1230,224,993 - 30,423,327 (-)Ensembl
GRCm38.p6 Ensembl1230,174,994 - 30,373,328 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142046   ⟹   ENSMUSP00000115942
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1230,224,481 - 30,423,327 (-)Ensembl
GRCm38.p6 Ensembl1230,174,482 - 30,373,328 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149710   ⟹   ENSMUSP00000123332
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1230,224,988 - 30,423,264 (-)Ensembl
GRCm38.p6 Ensembl1230,174,989 - 30,373,265 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156953
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1230,317,030 - 30,407,682 (-)Ensembl
GRCm38.p6 Ensembl1230,267,031 - 30,357,683 (-)Ensembl
RefSeq Acc Id: ENSMUST00000218489
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1230,362,585 - 30,423,319 (-)Ensembl
GRCm38.p6 Ensembl1230,312,586 - 30,373,320 (-)Ensembl
RefSeq Acc Id: ENSMUST00000218723
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1230,357,171 - 30,423,294 (-)Ensembl
GRCm38.p6 Ensembl1230,307,172 - 30,373,295 (-)Ensembl
RefSeq Acc Id: NM_001324519   ⟹   NP_001311448
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391230,224,481 - 30,423,375 (-)NCBI
GRCm381230,174,482 - 30,373,376 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001324520   ⟹   NP_001311449
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391230,224,481 - 30,423,375 (-)NCBI
GRCm381230,174,482 - 30,373,376 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001324521   ⟹   NP_001311450
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391230,224,481 - 30,423,375 (-)NCBI
GRCm381230,174,482 - 30,373,376 (-)NCBI
Sequence:
RefSeq Acc Id: NM_172951   ⟹   NP_766539
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391230,224,556 - 30,423,374 (-)NCBI
GRCm381230,174,557 - 30,373,375 (-)NCBI
MGSCv371230,859,422 - 31,058,240 (-)RGD
Celera1231,631,444 - 31,829,368 (-)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_136915
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391230,224,481 - 30,423,375 (-)NCBI
GRCm381230,174,482 - 30,373,376 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006515108   ⟹   XP_006515171
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391230,232,081 - 30,423,418 (-)NCBI
GRCm381230,182,082 - 30,373,392 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243873   ⟹   XP_011242175
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391230,232,081 - 30,293,341 (-)NCBI
GRCm381230,182,082 - 30,243,342 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315072   ⟹   XP_017170561
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391230,232,081 - 30,423,424 (-)NCBI
GRCm381230,182,082 - 30,373,392 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003950053
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391230,224,988 - 30,423,418 (-)NCBI
GRCm381230,174,989 - 30,373,392 (-)NCBI
Sequence:
RefSeq Acc Id: XR_872414
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391230,224,988 - 30,423,418 (-)NCBI
GRCm381230,174,989 - 30,373,392 (-)NCBI
Sequence:
RefSeq Acc Id: NP_766539   ⟸   NM_172951
- Peptide Label: isoform 1
- UniProtKB: B2RSQ0 (UniProtKB/Swiss-Prot),   Q925E0 (UniProtKB/Swiss-Prot),   Q8BZG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006515171   ⟸   XM_006515108
- Peptide Label: isoform X1
- UniProtKB: Q8BZG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242175   ⟸   XM_011243873
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001311449   ⟸   NM_001324520
- Peptide Label: isoform 3 precursor
- UniProtKB: Q8BZG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001311448   ⟸   NM_001324519
- Peptide Label: isoform 2
- UniProtKB: Q8BZG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001311450   ⟸   NM_001324521
- Peptide Label: isoform 4
- Sequence:
RefSeq Acc Id: XP_017170561   ⟸   XM_017315072
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000114245   ⟸   ENSMUST00000133324
RefSeq Acc Id: ENSMUSP00000123332   ⟸   ENSMUST00000149710
RefSeq Acc Id: ENSMUSP00000021004   ⟸   ENSMUST00000021004
RefSeq Acc Id: ENSMUSP00000115942   ⟸   ENSMUST00000142046
Protein Domains
PDZ   PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q925E0-F1-model_v2 AlphaFold Q925E0 1-539 view protein structure

Promoters
RGD ID:8678066
Promoter ID:EPDNEW_M17064
Type:initiation region
Name:Sntg2_1
Description:Mus musculus syntrophin, gamma 2 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381230,373,328 - 30,373,388EPDNEW
RGD ID:6823432
Promoter ID:MM_KWN:11414
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000059956
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361230,885,611 - 30,886,111 (-)MPROMDB
RGD ID:6823431
Promoter ID:MM_KWN:11417
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Liver
Transcripts:OTTMUST00000059867,   OTTMUST00000059868,   OTTMUST00000059869,   OTTMUST00000059870,   OTTMUST00000059955
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361231,057,931 - 31,058,431 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919541 AgrOrtholog
Ensembl Genes ENSMUSG00000020672 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000021004 ENTREZGENE
  ENSMUST00000021004.14 UniProtKB/Swiss-Prot
  ENSMUST00000133324 ENTREZGENE
  ENSMUST00000133324.8 UniProtKB/TrEMBL
  ENSMUST00000142046 ENTREZGENE
  ENSMUST00000142046.8 UniProtKB/TrEMBL
  ENSMUST00000149710.8 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_domain UniProtKB/Swiss-Prot
  Syntrophin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:268534 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1919541 ENTREZGENE
NCBI Gene 268534 ENTREZGENE
PANTHER GAMMA-2-SYNTROPHIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10554 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sntg2 PhenoGen
PROSITE PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/Swiss-Prot
SMART PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2RSQ0 ENTREZGENE
  D6RCX3_MOUSE UniProtKB/TrEMBL
  D6RE37_MOUSE UniProtKB/TrEMBL
  D6RFR4_MOUSE UniProtKB/TrEMBL
  Q8BZG8 ENTREZGENE, UniProtKB/TrEMBL
  Q925E0 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B2RSQ0 UniProtKB/Swiss-Prot