Fam78a (family with sequence similarity 78 member A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Fam78a (family with sequence similarity 78 member A) Heterocephalus glaber
Analyze
Symbol: Fam78a
Name: family with sequence similarity 78 member A
RGD ID: 18905622
Description: ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2K (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Protein FAM78A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247604,623,937 - 4,639,240 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247604,621,149 - 4,639,175 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Fam78a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247604,623,937 - 4,639,240 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247604,621,149 - 4,639,175 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FAM78A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389131,258,078 - 131,281,045 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9131,258,076 - 131,277,365 (-)EnsemblGRCh38hg38GRCh38
GRCh379134,133,465 - 134,153,422 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369133,123,286 - 133,141,727 (-)NCBINCBI36Build 36hg18NCBI36
Build 349131,163,019 - 131,181,460NCBI
Celera9104,672,525 - 104,690,968 (-)NCBICelera
Cytogenetic Map9q34.13NCBI
HuRef9103,624,314 - 103,642,697 (-)NCBIHuRef
CHM1_19134,283,073 - 134,301,504 (-)NCBICHM1_1
T2T-CHM13v2.09143,466,357 - 143,489,327 (-)NCBIT2T-CHM13v2.0
Fam78a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39231,932,720 - 31,977,484 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl231,940,067 - 31,974,869 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl231,940,098 - 31,954,923 (-)EnsemblGRCm39 Ensembl
GRCm38232,045,969 - 32,087,472 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,050,055 - 32,084,857 (-)EnsemblGRCm38mm10GRCm38
MGSCv37231,922,405 - 31,939,225 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36231,888,894 - 31,905,714 (-)NCBIMGSCv36mm8
Celera231,770,221 - 31,787,261 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.0NCBI
Fam78a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8335,753,712 - 35,771,600 (-)NCBIGRCr8
mRatBN7.2315,355,958 - 15,376,330 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,355,955 - 15,373,812 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx318,425,573 - 18,442,182 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,010,559 - 27,027,168 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,261,310 - 25,277,926 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0311,086,016 - 11,105,151 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,087,299 - 11,102,515 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,438,610 - 16,454,692 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,183,349 - 11,197,249 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera310,103,056 - 10,122,065 (-)NCBICelera
Cytogenetic Map3p12NCBI
Fam78a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555131,060,020 - 1,073,817 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555131,060,145 - 1,073,817 (-)NCBIChiLan1.0ChiLan1.0
FAM78A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2118,079,269 - 8,099,238 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan198,081,612 - 8,104,304 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09102,380,073 - 102,399,992 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19131,024,410 - 131,042,975 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9131,024,410 - 131,042,975 (-)Ensemblpanpan1.1panPan2
FAM78A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1952,805,512 - 52,818,197 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl952,805,927 - 52,818,190 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha952,070,680 - 52,083,918 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0953,706,556 - 53,719,802 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl953,707,023 - 53,719,288 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1952,484,097 - 52,499,461 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0952,804,604 - 52,817,833 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0952,897,599 - 52,910,840 (+)NCBIUU_Cfam_GSD_1.0
Fam78a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947198,317,563 - 198,327,887 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648718,083,859 - 18,096,699 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648718,086,085 - 18,096,656 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM78A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1271,242,333 - 271,257,836 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11271,242,312 - 271,257,839 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21305,271,852 - 305,284,934 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM78A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1126,862,627 - 6,881,942 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl126,863,189 - 6,881,991 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660798,627,260 - 8,645,621 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000016725   ⟹   ENSHGLP00000016555
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247604,623,937 - 4,639,240 (+)Ensembl
RefSeq Acc Id: XM_004849093   ⟹   XP_004849150
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247604,621,149 - 4,639,175 (+)NCBI
RefSeq Acc Id: XM_004849094   ⟹   XP_004849151
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247604,623,284 - 4,639,175 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004849150 (Get FASTA)   NCBI Sequence Viewer  
  XP_004849151 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB00216 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000016555
  ENSHGLP00000034384
GenBank Protein JAO03131 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004849150   ⟸   XM_004849093
- UniProtKB: G5AT55 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004849151   ⟸   XM_004849094
- UniProtKB: G5AT55 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000016555   ⟸   ENSHGLT00000016725


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011828 Ensembl, ENTREZGENE
  ENSHGLG00000049348 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000016725 ENTREZGENE
  ENSHGLT00000052155 UniProtKB/TrEMBL
InterPro FAM78 UniProtKB/TrEMBL
KEGG Report hgl:101721476 UniProtKB/TrEMBL
NCBI Gene Fam78a ENTREZGENE
PANTHER PTHR31655 UniProtKB/TrEMBL
  PTHR31655:SF3 UniProtKB/TrEMBL
UniProt G5AT55 ENTREZGENE, UniProtKB/TrEMBL