Fam136a (family with sequence similarity 136 member A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Fam136a (family with sequence similarity 136 member A) Heterocephalus glaber
Analyze
Symbol: Fam136a
Name: family with sequence similarity 136 member A
RGD ID: 18904875
Description: ASSOCIATED WITH genetic disease (ortholog); Meniere's disease (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein FAM136A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247623,150,291 - 3,155,149 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247623,150,893 - 3,156,086 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Fam136a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247623,150,291 - 3,155,149 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247623,150,893 - 3,156,086 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FAM136A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38270,295,976 - 70,302,067 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl270,295,976 - 70,302,067 (-)EnsemblGRCh38hg38GRCh38
GRCh37270,523,108 - 70,529,199 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36270,376,613 - 70,382,705 (-)NCBINCBI36Build 36hg18NCBI36
Celera270,373,798 - 70,379,911 (-)NCBICelera
Cytogenetic Map2p13.3NCBI
HuRef270,259,949 - 70,266,062 (-)NCBIHuRef
CHM1_1270,452,722 - 70,458,834 (-)NCBICHM1_1
T2T-CHM13v2.0270,307,726 - 70,313,817 (-)NCBIT2T-CHM13v2.0
Fam136a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39686,342,453 - 86,347,040 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl686,342,628 - 86,347,040 (+)EnsemblGRCm39 Ensembl
GRCm38686,365,471 - 86,370,058 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl686,365,646 - 86,370,058 (+)EnsemblGRCm38mm10GRCm38
MGSCv37686,315,677 - 86,320,052 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36686,331,317 - 86,335,692 (+)NCBIMGSCv36mm8
Celera688,303,323 - 88,307,699 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map637.69NCBI
Fam136a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84120,362,563 - 120,368,479 (+)NCBIGRCr8
mRatBN7.24118,805,129 - 118,811,046 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4118,805,127 - 118,811,047 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4124,277,928 - 124,283,838 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04120,052,674 - 120,058,585 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04118,676,931 - 118,682,842 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04118,160,147 - 118,166,062 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4118,160,147 - 118,166,062 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04182,731,397 - 182,737,312 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44120,541,766 - 120,547,681 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14120,786,271 - 120,791,059 (+)NCBI
Celera4107,776,849 - 107,782,763 (+)NCBICelera
Cytogenetic Map4q34NCBI
Fam136a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542414,837,264 - 14,841,354 (+)NCBIChiLan1.0ChiLan1.0
FAM136A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21256,096,091 - 56,102,202 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A56,100,029 - 56,106,147 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A70,350,196 - 70,356,316 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A71,466,116 - 71,472,067 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A71,467,428 - 71,471,987 (-)Ensemblpanpan1.1panPan2
FAM136A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11068,837,611 - 68,841,750 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1068,725,403 - 68,729,542 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01069,859,381 - 69,863,520 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1069,860,455 - 69,863,517 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11069,576,715 - 69,580,854 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01069,840,022 - 69,844,161 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01070,138,702 - 70,142,831 (-)NCBIUU_Cfam_GSD_1.0
Fam136a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629214,114,590 - 14,119,110 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649114,451,626 - 14,457,301 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649114,451,858 - 14,456,710 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM136A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl372,190,972 - 72,197,360 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1372,190,918 - 72,196,789 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2375,462,137 - 75,467,935 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM136A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11436,815,744 - 36,822,026 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1436,815,711 - 36,822,023 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604575,188,334 - 75,194,425 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000006065   ⟹   ENSHGLP00000005991
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247623,150,291 - 3,155,149 (+)Ensembl
RefSeq Acc Id: XM_021262492   ⟹   XP_021118151
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247623,150,893 - 3,156,086 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021118151 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000056976
  ENSHGLP00100058189
GenBank Protein JAN96630 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021118151   ⟸   XM_021262492
RefSeq Acc Id: ENSHGLP00000005991   ⟸   ENSHGLT00000006065


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004381 Ensembl
  ENSHGLG00000043927 UniProtKB/TrEMBL
  ENSHGLG00100048830 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000078529 UniProtKB/TrEMBL
  ENSHGLT00100076911 UniProtKB/TrEMBL
InterPro DUF842_euk UniProtKB/TrEMBL
KEGG Report hgl:101724316 UniProtKB/TrEMBL
NCBI Gene Fam136a ENTREZGENE
PANTHER PROTEIN FAM136A UniProtKB/TrEMBL
  PTHR21096 UniProtKB/TrEMBL
Pfam DUF842 UniProtKB/TrEMBL
UniProt A0A0P6J0F3_HETGA UniProtKB/TrEMBL