Ifi35 (interferon induced protein 35) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ifi35 (interferon induced protein 35) Heterocephalus glaber
Analyze
Symbol: Ifi35
Name: interferon induced protein 35
RGD ID: 18904614
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN macrophage activation involved in immune response (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of non-canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Human Influenza (ortholog); Spontaneous Abortions (ortholog); FOUND IN cytosol (ortholog); extracellular space (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: interferon-induced 35 kDa protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247951,260,476 - 1,262,080 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247951,260,476 - 1,268,015 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ifi35
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247951,260,476 - 1,262,080 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247951,260,476 - 1,268,015 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
IFI35
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381743,006,784 - 43,014,456 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1743,006,740 - 43,014,456 (+)EnsemblGRCh38hg38GRCh38
GRCh371741,158,801 - 41,166,473 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361738,412,351 - 38,419,999 (+)NCBINCBI36Build 36hg18NCBI36
Build 341738,412,350 - 38,419,998NCBI
Celera1737,815,041 - 37,822,746 (+)NCBICelera
Cytogenetic Map17q21.31NCBI
HuRef1736,924,506 - 36,932,236 (+)NCBIHuRef
CHM1_11741,394,259 - 41,402,019 (+)NCBICHM1_1
T2T-CHM13v2.01743,864,072 - 43,871,742 (+)NCBIT2T-CHM13v2.0
Ifi35
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911101,339,238 - 101,349,527 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11101,339,233 - 101,349,524 (+)EnsemblGRCm39 Ensembl
GRCm3811101,448,412 - 101,458,701 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11101,448,407 - 101,458,698 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711101,309,726 - 101,320,015 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611101,264,571 - 101,274,552 (+)NCBIMGSCv36mm8
Celera11113,135,844 - 113,146,133 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1165.07NCBI
Ifi35
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81086,881,270 - 86,889,523 (+)NCBIGRCr8
mRatBN7.21086,381,023 - 86,389,279 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1086,381,010 - 86,389,952 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1091,418,433 - 91,426,447 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01090,893,398 - 90,901,717 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01086,286,702 - 86,295,023 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01089,358,376 - 89,366,628 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1089,358,376 - 89,366,626 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01089,156,392 - 89,164,644 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41090,475,323 - 90,483,575 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11090,489,692 - 90,497,943 (+)NCBI
Celera1085,098,510 - 85,106,762 (+)NCBICelera
Cytogenetic Map10q31NCBI
Ifi35
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545116,790,383 - 16,802,664 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545116,790,998 - 16,798,993 (+)NCBIChiLan1.0ChiLan1.0
IFI35
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21921,977,994 - 21,985,622 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11723,867,276 - 23,874,824 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01714,310,106 - 14,317,648 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11714,539,625 - 14,544,931 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1714,539,625 - 14,544,931 (-)Ensemblpanpan1.1panPan2
IFI35
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1920,050,438 - 20,061,346 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl920,050,438 - 20,061,319 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha919,512,038 - 19,522,948 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0920,768,845 - 20,779,755 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl920,768,851 - 20,779,732 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1919,553,944 - 19,564,859 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0919,820,685 - 19,831,593 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0919,922,745 - 19,933,656 (-)NCBIUU_Cfam_GSD_1.0
Ifi35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560219,364,845 - 19,367,164 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649017,708,071 - 17,713,492 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649017,707,997 - 17,710,294 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFI35
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1219,879,387 - 19,890,314 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11219,879,386 - 19,890,330 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21219,991,296 - 20,002,226 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IFI35
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11663,276,493 - 63,284,196 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1663,273,829 - 63,284,283 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607734,063,175 - 34,070,917 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000017808   ⟹   ENSHGLP00000017633
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247951,260,476 - 1,262,080 (-)Ensembl
RefSeq Acc Id: XM_004859286   ⟹   XP_004859343
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247951,260,476 - 1,268,015 (-)NCBI
RefSeq Acc Id: XM_004859287   ⟹   XP_004859344
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247951,260,476 - 1,268,015 (-)NCBI
RefSeq Acc Id: XM_013077743   ⟹   XP_012933197
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247951,260,476 - 1,268,015 (-)NCBI
RefSeq Acc Id: XM_021240257   ⟹   XP_021095916
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247951,260,476 - 1,268,015 (-)NCBI
RefSeq Acc Id: XM_021240258   ⟹   XP_021095917
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247951,260,476 - 1,268,015 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004859343 (Get FASTA)   NCBI Sequence Viewer  
  XP_004859344 (Get FASTA)   NCBI Sequence Viewer  
  XP_012933197 (Get FASTA)   NCBI Sequence Viewer  
  XP_021095916 (Get FASTA)   NCBI Sequence Viewer  
  XP_021095917 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000017633
GenBank Protein JAN97398 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021095916   ⟸   XM_021240257
- Peptide Label: isoform X4
- UniProtKB: A0AAX6RGT7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021095917   ⟸   XM_021240258
- Peptide Label: isoform X5
- UniProtKB: A0AAX6RJM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004859343   ⟸   XM_004859286
- Peptide Label: isoform X2
- UniProtKB: A0AAX6PTQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012933197   ⟸   XM_013077743
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J2B5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004859344   ⟸   XM_004859287
- Peptide Label: isoform X1
- UniProtKB: A0AAX6PTQ6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000017633   ⟸   ENSHGLT00000017808


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012617 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000017808 ENTREZGENE
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nmi/IFP35_dom UniProtKB/TrEMBL
  Nmi/IFP35_N UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
NCBI Gene Ifi35 ENTREZGENE
PANTHER INTERFERON-INDUCED PROTEIN 35/NMI N-MYC/STAT INTERACTING PROTEIN UniProtKB/TrEMBL
  PTHR15225:SF1 UniProtKB/TrEMBL
Pfam IFP_35_N UniProtKB/TrEMBL
  NID UniProtKB/TrEMBL
UniProt A0A0P6J2B5 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PTQ0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PTQ6 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RGT7 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RJM4 ENTREZGENE, UniProtKB/TrEMBL