Arrdc1 (arrestin domain containing 1) - Rat Genome Database

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Gene: Arrdc1 (arrestin domain containing 1) Heterocephalus glaber
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Symbol: Arrdc1
Name: arrestin domain containing 1
RGD ID: 18904118
Description: ENCODES a protein that exhibits arrestin family protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN extracellular transport (ortholog); extracellular vesicle biogenesis (ortholog); negative regulation of Notch signaling pathway (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); developmental and epileptic encephalopathy 14 (ortholog); FOUND IN cytoplasmic vesicle (ortholog); extracellular exosome (ortholog); extracellular vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: arrestin domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624760468,069 - 475,070 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624760464,914 - 475,070 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Arrdc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624760468,069 - 475,070 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624760464,914 - 475,070 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ARRDC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389137,605,686 - 137,615,360 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9137,605,685 - 137,615,360 (+)EnsemblGRCh38hg38GRCh38
GRCh379140,500,138 - 140,509,812 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,619,917 - 139,629,633 (+)NCBINCBI36Build 36hg18NCBI36
Build 349137,775,942 - 137,785,646NCBI
Celera9111,023,757 - 111,033,473 (+)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9109,962,058 - 109,971,771 (+)NCBIHuRef
CHM1_19140,648,827 - 140,658,543 (+)NCBICHM1_1
T2T-CHM13v2.09149,857,368 - 149,867,042 (+)NCBIT2T-CHM13v2.0
Arrdc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39224,815,364 - 24,825,347 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl224,815,364 - 24,825,264 (-)EnsemblGRCm39 Ensembl
GRCm38224,925,352 - 24,935,335 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl224,925,352 - 24,935,252 (-)EnsemblGRCm38mm10GRCm38
MGSCv37224,780,872 - 24,790,801 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36224,747,361 - 24,757,172 (-)NCBIMGSCv36mm8
Celera224,647,499 - 24,657,496 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map216.84NCBI
Arrdc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,133,190 - 28,140,378 (-)NCBIGRCr8
mRatBN7.237,735,002 - 7,742,195 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl37,735,011 - 7,742,197 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx310,839,750 - 10,846,806 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,425,978 - 19,433,034 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,615,814 - 17,622,874 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,129,876 - 2,137,161 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,129,879 - 2,136,936 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.032,112,656 - 2,119,844 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,232,018 - 3,239,076 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.133,232,017 - 3,239,188 (-)NCBI
Celera32,564,240 - 2,571,297 (-)NCBICelera
Cytogenetic Map3p13NCBI
Arrdc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,479,468 - 5,490,990 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555135,479,468 - 5,486,489 (+)NCBIChiLan1.0ChiLan1.0
ARRDC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2111,739,046 - 1,748,723 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan191,741,381 - 1,751,044 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09108,711,276 - 108,720,942 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19137,664,787 - 137,668,688 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,664,787 - 137,668,688 (+)Ensemblpanpan1.1panPan2
ARRDC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,178,423 - 48,187,051 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,179,098 - 48,187,022 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,365,102 - 47,373,727 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,040,038 - 49,048,665 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,040,713 - 49,048,640 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1947,816,339 - 47,824,973 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,115,486 - 48,124,099 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,162,003 - 48,170,627 (-)NCBIUU_Cfam_GSD_1.0
Arrdc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,883,206 - 202,893,288 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936669483,134 - 491,856 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936669484,446 - 491,843 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARRDC1
(Sus scrofa - pig)		 No map positions available.
ARRDC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112598,686 - 608,282 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12595,342 - 608,198 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660584,745,671 - 4,755,253 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000021043   ⟹   ENSHGLP00000020840
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624760468,069 - 475,070 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000021044   ⟹   ENSHGLP00000020841
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624760468,956 - 475,014 (-)Ensembl
RefSeq Acc Id: XM_004848709   ⟹   XP_004848766
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624760464,914 - 475,067 (-)NCBI
RefSeq Acc Id: XM_013073912   ⟹   XP_012929366
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624760464,914 - 475,070 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004848766 (Get FASTA)   NCBI Sequence Viewer  
  XP_012929366 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000020840
  ENSHGLP00100050259
GenBank Protein JAO02268 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_012929366   ⟸   XM_013073912
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004848766   ⟸   XM_004848709
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JKQ0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000020841   ⟸   ENSHGLT00000021044
Ensembl Acc Id: ENSHGLP00000020840   ⟸   ENSHGLT00000021043


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014897 Ensembl, ENTREZGENE
  ENSHGLG00100007726 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000021043 ENTREZGENE
  ENSHGLT00100076883 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.640 UniProtKB/TrEMBL
InterPro Arrestin-like_C UniProtKB/TrEMBL
  Arrestin-like_N UniProtKB/TrEMBL
  Arrestin_C-like UniProtKB/TrEMBL
  Arrestin_domain-protein UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
KEGG Report hgl:101702069 UniProtKB/TrEMBL
NCBI Gene Arrdc1 ENTREZGENE
PANTHER ARRESTIN DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
  ARRESTIN DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam Arrestin_C UniProtKB/TrEMBL
  Arrestin_N UniProtKB/TrEMBL
SMART Arrestin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF81296 UniProtKB/TrEMBL
UniProt A0A0P6JKQ0 ENTREZGENE, UniProtKB/TrEMBL