ARRDC1 (arrestin domain containing 1) - Rat Genome Database

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Gene: ARRDC1 (arrestin domain containing 1) Sus scrofa
Analyze
Symbol: ARRDC1
Name: arrestin domain containing 1
RGD ID: 13932783
Description: ENCODES a protein that exhibits arrestin family protein binding (inferred); identical protein binding (inferred); ubiquitin protein ligase binding (inferred); INVOLVED IN ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); developmental and epileptic encephalopathy 14 (ortholog); FOUND IN extracellular exosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: arrestin domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position: No map positions available.


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ARRDC1
(Sus scrofa - pig)		 No map positions available.
ARRDC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389137,605,686 - 137,615,360 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9137,605,685 - 137,615,360 (+)EnsemblGRCh38hg38GRCh38
GRCh379140,500,138 - 140,509,812 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,619,917 - 139,629,633 (+)NCBINCBI36Build 36hg18NCBI36
Build 349137,775,942 - 137,785,646NCBI
Celera9111,023,757 - 111,033,473 (+)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9109,962,058 - 109,971,771 (+)NCBIHuRef
CHM1_19140,648,827 - 140,658,543 (+)NCBICHM1_1
T2T-CHM13v2.09149,857,368 - 149,867,042 (+)NCBIT2T-CHM13v2.0
Arrdc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39224,815,364 - 24,825,347 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl224,815,364 - 24,825,264 (-)EnsemblGRCm39 Ensembl
GRCm38224,925,352 - 24,935,335 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl224,925,352 - 24,935,252 (-)EnsemblGRCm38mm10GRCm38
MGSCv37224,780,872 - 24,790,801 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36224,747,361 - 24,757,172 (-)NCBIMGSCv36mm8
Celera224,647,499 - 24,657,496 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map216.84NCBI
Arrdc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,133,190 - 28,140,378 (-)NCBIGRCr8
mRatBN7.237,735,002 - 7,742,195 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl37,735,011 - 7,742,197 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx310,839,750 - 10,846,806 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,425,978 - 19,433,034 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,615,814 - 17,622,874 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,129,876 - 2,137,161 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,129,879 - 2,136,936 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.032,112,656 - 2,119,844 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,232,018 - 3,239,076 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.133,232,017 - 3,239,188 (-)NCBI
Celera32,564,240 - 2,571,297 (-)NCBICelera
Cytogenetic Map3p13NCBI
Arrdc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,479,468 - 5,490,990 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555135,479,468 - 5,486,489 (+)NCBIChiLan1.0ChiLan1.0
ARRDC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2111,739,046 - 1,748,723 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan191,741,381 - 1,751,044 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09108,711,276 - 108,720,942 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19137,664,787 - 137,668,688 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,664,787 - 137,668,688 (+)Ensemblpanpan1.1panPan2
ARRDC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,178,423 - 48,187,051 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,179,098 - 48,187,022 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,365,102 - 47,373,727 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,040,038 - 49,048,665 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,040,713 - 49,048,640 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1947,816,339 - 47,824,973 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,115,486 - 48,124,099 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,162,003 - 48,170,627 (-)NCBIUU_Cfam_GSD_1.0
Arrdc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,883,206 - 202,893,288 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936669483,134 - 491,856 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936669484,446 - 491,843 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARRDC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112598,686 - 608,282 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12595,342 - 608,198 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660584,745,671 - 4,755,253 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arrdc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624760468,069 - 475,070 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624760464,914 - 475,070 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1
Low 10 4 3 4 2 23 2 2 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021081097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021081098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021081099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021081100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021081101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021081102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021081103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021081104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021081105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021081106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021081107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021081108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021081109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021081110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021081111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021081112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021081113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002340966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002340967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01023381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF589202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Protein Sequences
Protein RefSeqs XP_020936756 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936757 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936758 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936759 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936760 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936761 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936762 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936763 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936764 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936765 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936766 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936767 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936768 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936769 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936770 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936771 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936772 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AHB08948 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000031719
  ENSSSCP00000031719.3
  ENSSSCP00000034172
  ENSSSCP00000034172.1
  ENSSSCP00000049085
  ENSSSCP00000049085.3
  ENSSSCP00000051904
  ENSSSCP00000051904.2
  ENSSSCP00015047429.1
  ENSSSCP00015047431.1
  ENSSSCP00025035429.1
  ENSSSCP00025035481.1
  ENSSSCP00025035545.1
  ENSSSCP00025035598.1
  ENSSSCP00030034193.1
  ENSSSCP00030034207.1
  ENSSSCP00030034210.1
  ENSSSCP00030034212.1
  ENSSSCP00030034218.1
  ENSSSCP00035049109.1
  ENSSSCP00035049110.1
  ENSSSCP00035049111.1
  ENSSSCP00035049112.1
  ENSSSCP00035049113.1
  ENSSSCP00040030749.1
  ENSSSCP00040030784.1
  ENSSSCP00040030823.1
  ENSSSCP00040030865.1
  ENSSSCP00040030898.1
  ENSSSCP00045023430.1
  ENSSSCP00045023480.1
  ENSSSCP00045023525.1
  ENSSSCP00045023602.1
  ENSSSCP00050013369.1
  ENSSSCP00050013374.1
  ENSSSCP00050013375.1
  ENSSSCP00055004900.1
  ENSSSCP00055004914.1
  ENSSSCP00055004931.1
  ENSSSCP00055004938.1
  ENSSSCP00055004944.1
  ENSSSCP00055004957.1
  ENSSSCP00060000349.1
  ENSSSCP00060000352.1
  ENSSSCP00060000354.1
  ENSSSCP00065001853.1
  ENSSSCP00065001856.1
  ENSSSCP00065001859.1
  ENSSSCP00065001863.1
  ENSSSCP00065001867.1
  ENSSSCP00065001869.1
Protein Domains
Arrestin C-terminal-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000039824 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015081241 UniProtKB/TrEMBL
  ENSSSCG00025059597 UniProtKB/TrEMBL
  ENSSSCG00030053592 UniProtKB/TrEMBL
  ENSSSCG00035081327 UniProtKB/TrEMBL
  ENSSSCG00040053283 UniProtKB/TrEMBL
  ENSSSCG00045019810 UniProtKB/TrEMBL
  ENSSSCG00050023732 UniProtKB/TrEMBL
  ENSSSCG00055003215 UniProtKB/TrEMBL
  ENSSSCG00060001040 UniProtKB/TrEMBL
  ENSSSCG00065003298 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000053624 ENTREZGENE
  ENSSSCT00000053624.3 UniProtKB/TrEMBL
  ENSSSCT00000058193 ENTREZGENE
  ENSSSCT00000058193.3 UniProtKB/TrEMBL
  ENSSSCT00000061338 ENTREZGENE
  ENSSSCT00000061338.3 UniProtKB/TrEMBL
  ENSSSCT00000062621 ENTREZGENE
  ENSSSCT00000062621.3 UniProtKB/TrEMBL
  ENSSSCT00015110812.1 UniProtKB/TrEMBL
  ENSSSCT00015110814.1 UniProtKB/TrEMBL
  ENSSSCT00025081570.1 UniProtKB/TrEMBL
  ENSSSCT00025081714.1 UniProtKB/TrEMBL
  ENSSSCT00025081882.1 UniProtKB/TrEMBL
  ENSSSCT00025082026.1 UniProtKB/TrEMBL
  ENSSSCT00030074734.1 UniProtKB/TrEMBL
  ENSSSCT00030074763.1 UniProtKB/TrEMBL
  ENSSSCT00030074779.1 UniProtKB/TrEMBL
  ENSSSCT00030074787.1 UniProtKB/TrEMBL
  ENSSSCT00030074805.1 UniProtKB/TrEMBL
  ENSSSCT00035111858.1 UniProtKB/TrEMBL
  ENSSSCT00035111859.1 UniProtKB/TrEMBL
  ENSSSCT00035111860.1 UniProtKB/TrEMBL
  ENSSSCT00035111861.1 UniProtKB/TrEMBL
  ENSSSCT00035111862.1 UniProtKB/TrEMBL
  ENSSSCT00040071997.1 UniProtKB/TrEMBL
  ENSSSCT00040072071.1 UniProtKB/TrEMBL
  ENSSSCT00040072161.1 UniProtKB/TrEMBL
  ENSSSCT00040072257.1 UniProtKB/TrEMBL
  ENSSSCT00040072335.1 UniProtKB/TrEMBL
  ENSSSCT00045033801.1 UniProtKB/TrEMBL
  ENSSSCT00045033873.1 UniProtKB/TrEMBL
  ENSSSCT00045033929.1 UniProtKB/TrEMBL
  ENSSSCT00045034022.1 UniProtKB/TrEMBL
  ENSSSCT00050032007.1 UniProtKB/TrEMBL
  ENSSSCT00050032018.1 UniProtKB/TrEMBL
  ENSSSCT00050032021.1 UniProtKB/TrEMBL
  ENSSSCT00055006236.1 UniProtKB/TrEMBL
  ENSSSCT00055006254.1 UniProtKB/TrEMBL
  ENSSSCT00055006273.1 UniProtKB/TrEMBL
  ENSSSCT00055006282.1 UniProtKB/TrEMBL
  ENSSSCT00055006288.1 UniProtKB/TrEMBL
  ENSSSCT00055006301.1 UniProtKB/TrEMBL
  ENSSSCT00060001235.1 UniProtKB/TrEMBL
  ENSSSCT00060001238.1 UniProtKB/TrEMBL
  ENSSSCT00060001242.1 UniProtKB/TrEMBL
  ENSSSCT00065004440.1 UniProtKB/TrEMBL
  ENSSSCT00065004443.1 UniProtKB/TrEMBL
  ENSSSCT00065004446.1 UniProtKB/TrEMBL
  ENSSSCT00065004450.1 UniProtKB/TrEMBL
  ENSSSCT00065004455.1 UniProtKB/TrEMBL
  ENSSSCT00065004461.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.640 UniProtKB/TrEMBL
InterPro Arrestin-like_N UniProtKB/TrEMBL
  Arrestin_C UniProtKB/TrEMBL
  Arrestin_C-like UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
NCBI Gene ARRDC1 ENTREZGENE
PANTHER ARRESTIN DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
  ARRESTIN DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam Arrestin_C UniProtKB/TrEMBL
  Arrestin_N UniProtKB/TrEMBL
SMART Arrestin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF81296 UniProtKB/TrEMBL
UniProt A0A286ZJR9_PIG UniProtKB/TrEMBL
  A0A286ZRB5 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AY62_PIG UniProtKB/TrEMBL
  A0A287B5W6_PIG UniProtKB/TrEMBL
  A0A480T0X8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0QDP1_PIG UniProtKB/TrEMBL
  A0A8D0SRX4_PIG UniProtKB/TrEMBL
  A0A8D0UWY2_PIG UniProtKB/TrEMBL
  A0A8D0XDP1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0XFV0_PIG UniProtKB/TrEMBL
  A0A8D1BEW5_PIG UniProtKB/TrEMBL
  A0A8D1BN85_PIG UniProtKB/TrEMBL
  A0A8D1BT87_PIG UniProtKB/TrEMBL
  A0A8D1BUP2_PIG UniProtKB/TrEMBL
  A0A8D1BUT5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1F2L7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1HU24_PIG UniProtKB/TrEMBL
  A0A8D1HYK8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PHU0_PIG UniProtKB/TrEMBL
  A0A8D1PK35_PIG UniProtKB/TrEMBL
  A0A8D1PM32_PIG UniProtKB/TrEMBL
  A0A8D1PMZ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TAF5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1X7J7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1X9V1_PIG UniProtKB/TrEMBL
  A0A8D2BXF6 ENTREZGENE, UniProtKB/TrEMBL
  V5PZU0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85544 ENTREZGENE