Kcna6 (potassium voltage-gated channel subfamily A member 6) - Rat Genome Database

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Gene: Kcna6 (potassium voltage-gated channel subfamily A member 6) Heterocephalus glaber
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Symbol: Kcna6
Name: potassium voltage-gated channel subfamily A member 6
RGD ID: 18903079
Description: ENCODES a protein that exhibits delayed rectifier potassium channel activity (inferred); potassium channel activity (inferred); voltage-gated potassium channel activity (inferred); INVOLVED IN action potential (inferred); potassium ion transmembrane transport (inferred); potassium ion transport (inferred); ASSOCIATED WITH cerebellar ataxia (ortholog); episodic ataxia type 1 (ortholog); esophageal atresia (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248601,835,685 - 1,867,104 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248601,835,679 - 1,867,606 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Kcna6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248601,835,685 - 1,867,104 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248601,835,679 - 1,867,606 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
KCNA6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38124,809,334 - 4,851,112 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl124,809,334 - 4,813,318 (+)EnsemblGRCh38hg38GRCh38
GRCh37124,918,500 - 4,960,278 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36124,788,603 - 4,792,839 (+)NCBINCBI36Build 36hg18NCBI36
Build 34124,788,602 - 4,792,839NCBI
Celera126,540,177 - 6,582,117 (+)NCBICelera
Cytogenetic Map12p13.32NCBI
HuRef124,775,114 - 4,817,084 (+)NCBIHuRef
CHM1_1124,917,927 - 4,959,949 (+)NCBICHM1_1
T2T-CHM13v2.0124,816,353 - 4,858,155 (+)NCBIT2T-CHM13v2.0
Kcna6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396126,685,292 - 126,717,610 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6126,685,292 - 126,717,637 (-)EnsemblGRCm39 Ensembl
GRCm386126,708,328 - 126,740,834 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6126,708,329 - 126,740,674 (-)EnsemblGRCm38mm10GRCm38
MGSCv376126,658,347 - 126,690,692 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366126,702,307 - 126,705,772 (-)NCBIMGSCv36mm8
Celera6128,378,065 - 128,410,554 (-)NCBICelera
Cytogenetic Map6F3NCBI
cM Map661.72NCBI
Kcna6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84161,229,103 - 161,262,352 (-)NCBIGRCr8
mRatBN7.24159,542,941 - 159,576,189 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4159,542,615 - 159,576,189 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4165,772,732 - 165,805,991 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04161,555,642 - 161,588,899 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04160,189,668 - 160,222,923 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04159,253,934 - 159,287,193 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4159,253,934 - 159,287,193 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04232,324,385 - 232,357,644 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44163,087,398 - 163,125,320 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14163,366,297 - 163,369,040 (-)NCBI
Celera4148,259,785 - 148,292,606 (-)NCBICelera
Cytogenetic Map4q42NCBI
Kcna6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554132,614,685 - 2,676,292 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554132,614,685 - 2,676,292 (+)NCBIChiLan1.0ChiLan1.0
KCNA6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21010,356,962 - 10,362,502 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11210,351,747 - 10,357,884 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0124,926,069 - 4,968,475 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1124,846,651 - 4,889,190 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl124,847,510 - 4,849,099 (+)Ensemblpanpan1.1panPan2
KCNA6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12740,042,051 - 40,045,812 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2740,044,334 - 40,045,812 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha276,635,593 - 6,639,492 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02740,397,855 - 40,401,770 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2740,400,162 - 40,401,748 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12740,286,847 - 40,290,747 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02740,311,960 - 40,315,859 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0276,046,284 - 6,050,185 (+)NCBIUU_Cfam_GSD_1.0
Kcna6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945104,211,782 - 104,214,883 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366064,969,787 - 4,971,446 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366064,969,282 - 4,972,383 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNA6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl565,657,225 - 65,658,835 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1565,625,581 - 65,659,557 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2567,830,814 - 67,865,506 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCNA6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1114,853,706 - 4,894,406 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl114,854,570 - 4,856,162 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660633,352,889 - 3,393,600 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004869372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01093108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000001498   ⟹   ENSHGLP00000001454
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248601,835,685 - 1,867,104 (+)Ensembl
RefSeq Acc Id: XM_004869372   ⟹   XP_004869429
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248601,835,679 - 1,867,606 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004869429 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000001454
RefSeq Acc Id: XP_004869429   ⟸   XM_004869372
- UniProtKB: A0AAX6QBC2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000001454   ⟸   ENSHGLT00000001498


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001123 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000001498 ENTREZGENE
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  Potassium Channel Kv1.1, Chain A UniProtKB/TrEMBL
  Voltage-gated potassium channels. Chain C UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv1 UniProtKB/TrEMBL
  KCNA6 UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  T1-type_BTB UniProtKB/TrEMBL
  VG_K_chnl UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/TrEMBL
NCBI Gene Kcna6 ENTREZGENE
PANTHER POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY A MEMBER 6 UniProtKB/TrEMBL
  VOLTAGE-GATED POTASSIUM CHANNEL UniProtKB/TrEMBL
Pfam BTB_2 UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
PRINTS KCHANNEL UniProtKB/TrEMBL
  KV16CHANNEL UniProtKB/TrEMBL
  KVCHANNEL UniProtKB/TrEMBL
  SHAKERCHANEL UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
Superfamily-SCOP POZ domain UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt A0AAX6QBC2 ENTREZGENE, UniProtKB/TrEMBL