Znf70 (zinc finger protein 70) - Rat Genome Database

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Gene: Znf70 (zinc finger protein 70) Heterocephalus glaber
Analyze
Symbol: Znf70
Name: zinc finger protein 70
RGD ID: 18902595
Description: ASSOCIATED WITH agammaglobulinemia 2 (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); megasporocyte nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474710,426,991 - 10,432,859 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474710,426,982 - 10,431,945 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Znf70
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474710,426,991 - 10,432,859 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474710,426,982 - 10,431,945 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZNF70
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382223,738,682 - 23,751,112 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2223,738,682 - 23,751,112 (-)EnsemblGRCh38hg38GRCh38
GRCh372224,080,869 - 24,093,299 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362222,413,772 - 22,423,279 (-)NCBINCBI36Build 36hg18NCBI36
Build 342222,408,326 - 22,417,833NCBI
Celera227,922,866 - 7,932,372 (-)NCBICelera
Cytogenetic Map22q11.23ENTREZGENE
HuRef227,071,845 - 7,081,349 (-)NCBIHuRef
CHM1_12224,096,041 - 24,105,521 (-)NCBICHM1_1
T2T-CHM13v2.02224,185,879 - 24,199,262 (-)NCBIT2T-CHM13v2.0
Znf70
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554558,490,100 - 8,491,440 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554558,486,052 - 8,492,437 (+)NCBIChiLan1.0ChiLan1.0
ZNF70
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22333,466,471 - 33,482,717 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12236,195,390 - 36,219,230 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0224,496,079 - 4,506,864 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12222,583,305 - 22,593,165 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2222,585,512 - 22,586,852 (-)Ensemblpanpan1.1panPan2
ZNF70
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12628,753,160 - 28,761,633 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2628,756,927 - 28,758,276 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2627,826,520 - 27,835,392 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02630,158,358 - 30,167,227 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2630,158,386 - 30,165,073 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12628,239,468 - 28,248,346 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02627,857,443 - 27,866,312 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02628,845,247 - 28,854,130 (+)NCBIUU_Cfam_GSD_1.0
Znf70
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118141,411,742 - 141,418,310 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366191,335,808 - 1,340,612 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366191,335,782 - 1,343,396 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VPREB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1449,925,379 - 49,929,541 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11449,924,874 - 49,929,562 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21453,370,235 - 53,371,880 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF70
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1196,858,875 - 6,867,805 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl196,861,102 - 6,862,442 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666100507,278 - 516,246 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000026685   ⟹   ENSHGLP00000026449
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474710,426,991 - 10,432,859 (+)Ensembl
RefSeq Acc Id: XM_004843587   ⟹   XP_004843644
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474710,426,982 - 10,431,945 (+)NCBI
RefSeq Acc Id: XM_021257291   ⟹   XP_021112950
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474710,427,378 - 10,431,945 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004843644 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112950 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB04758 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026449
  ENSHGLP00100039379
  ENSHGLP00100052830
Reference Protein Sequences
RefSeq Acc Id: XP_004843644   ⟸   XM_004843587
- UniProtKB: G5B647 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112950   ⟸   XM_021257291
- UniProtKB: G5B647 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000026449   ⟸   ENSHGLT00000026685


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018817 Ensembl, ENTREZGENE
  ENSHGLG00100038105 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000026685 ENTREZGENE
  ENSHGLT00100068757 UniProtKB/TrEMBL
  ENSHGLT00100078228 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report hgl:101701596 UniProtKB/TrEMBL
NCBI Gene Znf70 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 879 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt G5B647 ENTREZGENE, UniProtKB/TrEMBL