Fam83b (family with sequence similarity 83 member B) - Rat Genome Database

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Gene: Fam83b (family with sequence similarity 83 member B) Heterocephalus glaber
Analyze
Symbol: Fam83b
Name: family with sequence similarity 83 member B
RGD ID: 18900315
Description: ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); phosphatidylinositol 3-kinase catalytic subunit binding (ortholog); phosphatidylinositol 3-kinase regulatory subunit binding (ortholog); INVOLVED IN cell population proliferation (ortholog); positive regulation of epidermal growth factor receptor signaling pathway (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); keratin filament (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Protein FAM83B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248502,369,002 - 2,443,622 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248502,369,290 - 2,444,561 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Fam83b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248502,369,002 - 2,443,622 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248502,369,290 - 2,444,561 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FAM83B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38654,846,203 - 54,945,099 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl654,846,771 - 54,945,099 (+)EnsemblGRCh38hg38GRCh38
GRCh37654,711,569 - 54,809,897 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36654,819,528 - 54,914,779 (+)NCBINCBI36Build 36hg18NCBI36
Celera656,373,131 - 56,468,364 (+)NCBICelera
Cytogenetic Map6p12.1NCBI
HuRef654,545,298 - 54,643,503 (+)NCBIHuRef
CHM1_1654,713,326 - 54,811,655 (+)NCBICHM1_1
T2T-CHM13v2.0654,685,949 - 54,785,074 (+)NCBIT2T-CHM13v2.0
Fam83b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39976,394,742 - 76,474,397 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl976,397,336 - 76,474,398 (-)EnsemblGRCm39 Ensembl
GRCm38976,487,460 - 76,567,115 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl976,490,054 - 76,567,116 (-)EnsemblGRCm38mm10GRCm38
MGSCv37976,338,512 - 76,393,611 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36976,275,233 - 76,353,024 (-)NCBIMGSCv36mm8
Celera973,657,618 - 73,713,004 (-)NCBICelera
Cytogenetic Map9DNCBI
cM Map942.67NCBI
Fam83b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8886,167,778 - 86,244,222 (-)NCBIGRCr8
mRatBN7.2877,287,351 - 77,363,795 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl877,287,351 - 77,363,795 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx882,783,951 - 82,860,707 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0881,060,602 - 81,137,356 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0878,883,322 - 78,960,060 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0883,616,148 - 83,693,484 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl883,613,023 - 83,693,472 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0883,193,834 - 83,271,253 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4881,382,899 - 81,459,624 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1881,402,200 - 81,478,519 (-)NCBI
Celera877,066,817 - 77,140,423 (-)NCBICelera
Cytogenetic Map8q24NCBI
Fam83b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554111,247,005 - 1,301,953 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554111,248,945 - 1,306,848 (-)NCBIChiLan1.0ChiLan1.0
FAM83B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2569,335,936 - 69,410,502 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1665,212,379 - 65,286,983 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0654,396,231 - 54,493,970 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1656,030,700 - 56,128,390 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl656,033,426 - 56,128,390 (+)Ensemblpanpan1.1panPan2
FAM83B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11222,256,452 - 22,341,919 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1222,257,110 - 22,338,231 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1222,146,953 - 22,232,423 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01222,754,567 - 22,839,797 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1222,754,985 - 22,836,941 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11222,244,990 - 22,330,418 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01222,362,140 - 22,447,369 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01222,487,051 - 22,572,232 (+)NCBIUU_Cfam_GSD_1.0
Fam83b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494657,758,597 - 57,855,284 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364766,107,619 - 6,167,705 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364766,108,611 - 6,184,829 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM83B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl726,058,168 - 26,137,655 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1726,058,175 - 26,142,040 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2730,529,218 - 30,609,873 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM83B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11716,582,769 - 16,681,943 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1716,582,782 - 16,601,534 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605822,750,671 - 22,849,357 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000002408   ⟹   ENSHGLP00000002359
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248502,369,002 - 2,443,622 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000002409   ⟹   ENSHGLP00000002360
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248502,369,002 - 2,443,460 (+)Ensembl
RefSeq Acc Id: XM_004868827   ⟹   XP_004868884
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248502,369,290 - 2,444,561 (+)NCBI
RefSeq Acc Id: XM_021247615   ⟹   XP_021103274
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248502,369,290 - 2,444,561 (+)NCBI
RefSeq Acc Id: XM_021247616   ⟹   XP_021103275
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248502,370,431 - 2,444,561 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004868884 (Get FASTA)   NCBI Sequence Viewer  
  XP_021103274 (Get FASTA)   NCBI Sequence Viewer  
  XP_021103275 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB15706 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002359
  ENSHGLP00000002360
  ENSHGLP00100006130
GenBank Protein JAN97113 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021103274   ⟸   XM_021247615
- UniProtKB: A0A0P6J1M3 (UniProtKB/TrEMBL),   G5C2E5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004868884   ⟸   XM_004868827
- UniProtKB: A0A0P6J1M3 (UniProtKB/TrEMBL),   G5C2E5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103275   ⟸   XM_021247616
- UniProtKB: A0A0P6J1M3 (UniProtKB/TrEMBL),   G5C2E5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000002359   ⟸   ENSHGLT00000002408
RefSeq Acc Id: ENSHGLP00000002360   ⟸   ENSHGLT00000002409


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001791 Ensembl, ENTREZGENE
  ENSHGLG00100004617 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000002408 ENTREZGENE
  ENSHGLT00000002409 ENTREZGENE
  ENSHGLT00100006215 UniProtKB/TrEMBL
Gene3D-CATH Endonuclease Chain A UniProtKB/TrEMBL
InterPro FAM83_N UniProtKB/TrEMBL
NCBI Gene Fam83b ENTREZGENE
PANTHER PROTEIN FAM83B-RELATED UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam FAM83 UniProtKB/TrEMBL
Superfamily-SCOP Phospholipase D/nuclease UniProtKB/TrEMBL
UniProt A0A0P6J1M3 ENTREZGENE, UniProtKB/TrEMBL
  G5C2E5 ENTREZGENE, UniProtKB/TrEMBL