Symbol:
Psma6
Name:
proteasome 20S subunit alpha 6
RGD ID:
18899862
Description:
ENCODES a protein that exhibits NF-kappaB binding (ortholog); RNA binding (ortholog); INVOLVED IN positive regulation of canonical NF-kappaB signal transduction (ortholog); regulation of inflammatory response (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); ectodermal dysplasia and immunodeficiency 2 (ortholog); human immunodeficiency virus infectious disease (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
proteasome subunit alpha 6; Proteasome subunit alpha type-6
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Psma6
PSMA6 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 14 35,278,558 - 35,317,493 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 14 35,278,633 - 35,317,493 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 14 35,747,764 - 35,786,699 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 14 34,831,325 - 34,856,431 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 14 34,831,324 - 34,856,429 NCBI Celera 14 15,625,404 - 15,650,528 (+) NCBI Celera Cytogenetic Map 14 q13.2 NCBI HuRef 14 15,875,787 - 15,900,913 (+) NCBI HuRef CHM1_1 14 35,761,317 - 35,786,430 (+) NCBI CHM1_1 T2T-CHM13v2.0 14 29,466,162 - 29,505,113 (+) NCBI T2T-CHM13v2.0
Psma6 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 12 55,431,007 - 55,465,244 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 12 55,431,007 - 55,465,239 (+) Ensembl GRCm39 Ensembl GRCm38 12 55,384,222 - 55,418,459 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 12 55,384,222 - 55,418,454 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 12 56,499,812 - 56,519,446 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 12 56,317,027 - 56,336,581 (+) NCBI MGSCv36 mm8 Celera 12 56,548,065 - 56,567,699 (+) NCBI Celera Cytogenetic Map 12 C1 NCBI cM Map 12 23.94 NCBI
Psma6 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 6 78,500,676 - 78,531,693 (+) NCBI GRCr8 mRatBN7.2 6 72,765,534 - 72,796,554 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 6 72,765,473 - 72,796,554 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 6 73,199,417 - 73,216,739 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 6 73,505,773 - 73,523,097 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 6 72,934,448 - 72,951,769 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 6 76,174,460 - 76,205,429 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 6 76,174,452 - 76,205,426 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 6 85,711,990 - 85,742,474 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 6 75,649,844 - 75,667,404 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 6 75,652,972 - 75,670,527 (+) NCBI Celera 6 71,619,646 - 71,637,029 (+) NCBI Celera Cytogenetic Map 6 q23 NCBI
Psma6 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955409 25,750,270 - 25,787,533 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955409 25,751,578 - 25,787,533 (-) NCBI ChiLan1.0 ChiLan1.0
PSMA6 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 15 36,604,909 - 36,630,164 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 14 35,821,412 - 35,846,667 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 14 16,044,300 - 16,069,521 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 14 34,227,495 - 34,252,354 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 14 34,214,271 - 34,252,347 (+) Ensembl panpan1.1 panPan2
PSMA6 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 8 14,010,899 - 14,038,141 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 8 14,010,939 - 14,038,134 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 8 13,807,535 - 13,834,775 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 8 14,116,970 - 14,144,066 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 8 14,117,011 - 14,144,063 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 8 13,818,618 - 13,845,898 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 8 13,883,420 - 13,910,936 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 8 14,173,313 - 14,200,558 (+) NCBI UU_Cfam_GSD_1.0
Psma6
PSMA6 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 7 64,578,243 - 64,616,491 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 7 64,578,247 - 64,603,351 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 7 69,487,814 - 69,525,983 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
PSMA6 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 24 12,099,804 - 12,127,477 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 24 12,099,937 - 12,127,309 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666053 1,062,970 - 1,090,568 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
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Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSHGLT00000000631 ⟹ ENSHGLP00000000592
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla_female_1.0 Ensembl NW_004624838 1,449,266 - 1,475,393 (-) Ensembl
Ensembl Acc Id:
ENSHGLT00000000632 ⟹ ENSHGLP00000000593
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla_female_1.0 Ensembl NW_004624838 1,449,527 - 1,486,382 (-) Ensembl
RefSeq Acc Id:
XM_004867557 ⟹ XP_004867614
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624838 1,449,362 - 1,474,597 (-) NCBI
RefSeq Acc Id:
XM_021246633 ⟹ XP_021102292
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624838 1,449,362 - 1,474,597 (-) NCBI
RefSeq Acc Id:
XM_021246634 ⟹ XP_021102293
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624838 1,449,362 - 1,474,568 (-) NCBI
RefSeq Acc Id:
XP_021102292 ⟸ XM_021246633
- Peptide Label:
isoform X2
- UniProtKB:
A0AAX6S2R6 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_004867614 ⟸ XM_004867557
- Peptide Label:
isoform X1
- UniProtKB:
G5B117 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_021102293 ⟸ XM_021246634
- Peptide Label:
isoform X3
- UniProtKB:
A0AAX6S1A5 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSHGLP00000000593 ⟸ ENSHGLT00000000632
Ensembl Acc Id:
ENSHGLP00000000592 ⟸ ENSHGLT00000000631
