Galnt2 (polypeptide N-acetylgalactosaminyltransferase 2) - Rat Genome Database

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Gene: Galnt2 (polypeptide N-acetylgalactosaminyltransferase 2) Heterocephalus glaber
Analyze
Symbol: Galnt2
Name: polypeptide N-acetylgalactosaminyltransferase 2
RGD ID: 18899646
Description: ENCODES a protein that exhibits manganese ion binding (ortholog); INVOLVED IN O-glycan processing (ortholog); protein maturation (ortholog); protein O-linked glycosylation via serine (ortholog); ASSOCIATED WITH Actin-Accumulation Myopathy (ortholog); congenital disorder of glycosylation type IIq (ortholog); Congenital Disorder of Glycosylation Type IIt (ortholog); FOUND IN Golgi stack (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477519,079,648 - 19,221,562 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477519,080,035 - 19,221,509 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Galnt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477519,079,648 - 19,221,562 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477519,080,035 - 19,221,509 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GALNT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381230,057,789 - 230,282,122 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1230,057,990 - 230,282,122 (+)EnsemblGRCh38hg38GRCh38
GRCh371230,193,536 - 230,417,868 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361228,269,651 - 228,484,569 (+)NCBINCBI36Build 36hg18NCBI36
Build 341226,509,762 - 226,724,681NCBI
Celera1203,468,796 - 203,683,606 (+)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1200,802,622 - 200,906,230 (+)NCBIHuRef
CHM1_11231,475,550 - 231,690,433 (+)NCBICHM1_1
T2T-CHM13v2.01229,437,364 - 229,661,641 (+)NCBIT2T-CHM13v2.0
Galnt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398124,958,133 - 125,072,461 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8124,958,130 - 125,072,463 (+)EnsemblGRCm39 Ensembl
GRCm388124,231,394 - 124,345,722 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8124,231,391 - 124,345,724 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl8119,910,841 - 124,345,722 (+)EnsemblGRCm38mm10GRCm38
MGSCv378126,755,294 - 126,869,622 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368127,117,484 - 127,231,812 (+)NCBIMGSCv36mm8
Celera8128,510,317 - 128,631,122 (+)NCBICelera
Cytogenetic Map8E2NCBI
cM Map872.52NCBI
Galnt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81969,110,657 - 69,222,237 (+)NCBIGRCr8
mRatBN7.21952,213,226 - 52,324,816 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1952,213,351 - 52,324,813 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1958,998,617 - 59,110,078 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01959,846,711 - 59,958,202 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01961,925,059 - 62,036,532 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01957,043,858 - 57,115,123 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1957,047,830 - 57,115,132 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01967,730,567 - 67,824,804 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41954,479,961 - 54,529,837 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11954,403,248 - 54,532,495 (+)NCBI
Celera1951,646,020 - 51,695,948 (+)NCBICelera
Cytogenetic Map19q12NCBI
Galnt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554928,103,140 - 8,245,143 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554928,104,334 - 8,245,143 (-)NCBIChiLan1.0ChiLan1.0
GALNT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2118,926,270 - 19,141,630 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1119,118,382 - 19,333,822 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01205,615,072 - 205,830,399 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11210,755,425 - 210,859,867 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1210,750,698 - 210,859,867 (+)Ensemblpanpan1.1panPan2
GALNT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.149,055,753 - 9,243,741 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl48,977,509 - 9,281,048 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha49,047,537 - 9,238,587 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.049,079,878 - 9,271,142 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl49,079,878 - 9,271,118 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.149,090,715 - 9,281,701 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.049,205,484 - 9,396,350 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.049,433,272 - 9,624,403 (-)NCBIUU_Cfam_GSD_1.0
Galnt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934443,730,510 - 43,824,988 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648419,893,513 - 19,990,215 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648419,894,682 - 19,990,214 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALNT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1459,961,259 - 60,141,261 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11459,961,255 - 60,141,379 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21464,772,924 - 64,952,935 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GALNT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12567,324,572 - 67,543,035 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2567,347,697 - 67,543,039 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605569,218,260 - 69,437,159 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000021639   ⟹   ENSHGLP00000021430
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477519,079,648 - 19,221,562 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000021640   ⟹   ENSHGLP00000021431
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477519,082,278 - 19,221,422 (-)Ensembl
RefSeq Acc Id: XM_004854680   ⟹   XP_004854737
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477519,080,035 - 19,221,509 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004854737 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB11543 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000021430
  ENSHGLP00100003140
GenBank Protein JAO00147 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004854737   ⟸   XM_004854680
- UniProtKB: G5BQI2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000021430   ⟸   ENSHGLT00000021639
Ensembl Acc Id: ENSHGLP00000021431   ⟸   ENSHGLT00000021640


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015311 Ensembl, ENTREZGENE
  ENSHGLG00100002399 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000021639 ENTREZGENE
  ENSHGLT00100003197 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
InterPro GalNAc-T UniProtKB/TrEMBL
  Glyco_trans_2-like UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
  Ricin_B-like_lectins UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
KEGG Report hgl:101718473 UniProtKB/TrEMBL
NCBI Gene Galnt2 ENTREZGENE
PANTHER N-ACETYLGALACTOSAMINYLTRANSFERASE UniProtKB/TrEMBL
  POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 2 UniProtKB/TrEMBL
Pfam Glycos_transf_2 UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
PROSITE RICIN_B_LECTIN UniProtKB/TrEMBL
SMART RICIN UniProtKB/TrEMBL
Superfamily-SCOP SSF50370 UniProtKB/TrEMBL
  SSF53448 UniProtKB/TrEMBL
UniProt G5BQI2 ENTREZGENE, UniProtKB/TrEMBL