Galnt2 (polypeptide N-acetylgalactosaminyltransferase 2) - Rat Genome Database

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Gene: Galnt2 (polypeptide N-acetylgalactosaminyltransferase 2) Mus musculus
Analyze
Symbol: Galnt2
Name: polypeptide N-acetylgalactosaminyltransferase 2
RGD ID: 1321744
MGI Page MGI
Description: Predicted to enable manganese ion binding activity and polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in protein O-linked glycosylation and protein maturation. Predicted to be located in Golgi stack and perinuclear region of cytoplasm. Predicted to be active in Golgi apparatus. Is expressed in several structures, including alimentary system; floor plate; lens; lung mesenchyme; and submandibular gland primordium. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type II. Orthologous to human GALNT2 (polypeptide N-acetylgalactosaminyltransferase 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI480629; galNAc-T2; polypeptide GalNAc transferase 2; pp-GaNTase 2; ppGaNTase-T2; protein-UDP acetylgalactosaminyltransferase 2; UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 2; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398124,958,133 - 125,072,461 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8124,958,130 - 125,072,463 (+)EnsemblGRCm39 Ensembl
GRCm388124,231,394 - 124,345,722 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8124,231,391 - 124,345,724 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl8119,910,841 - 124,345,722 (+)EnsemblGRCm38mm10GRCm38
MGSCv378126,755,294 - 126,869,622 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368127,117,484 - 127,231,812 (+)NCBIMGSCv36mm8
Celera8128,510,317 - 128,631,122 (+)NCBICelera
Cytogenetic Map8E2NCBI
cM Map872.52NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-D  (EXP)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
aldehydo-D-glucose  (EXP)
alpha-pinene  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
atrazine  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (ISO)
Bisphenol B  (ISO)
bromobenzene  (ISO)
cannabidiol  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
ciglitazone  (ISO)
ciguatoxin CTX1B  (EXP)
clofibrate  (EXP)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
Cuprizon  (ISO)
D-glucose  (EXP)
decabromodiphenyl ether  (ISO)
dextran sulfate  (EXP)
dibutyl phthalate  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
fenthion  (EXP)
flutamide  (EXP,ISO)
folic acid  (EXP)
formaldehyde  (ISO)
fructose  (EXP)
fulvestrant  (ISO)
furan  (ISO)
gentamycin  (ISO)
glucose  (EXP)
haloperidol  (ISO)
ivermectin  (ISO)
lead diacetate  (EXP)
lead(0)  (EXP)
leflunomide  (ISO)
methapyrilene  (ISO)
methoxychlor  (ISO)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
nickel dichloride  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
rotenone  (EXP)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
tamoxifen  (EXP)
temozolomide  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (EXP)
tungsten  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9153242   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11159923   PMID:11217851   PMID:12477932   PMID:12520002   PMID:12651884   PMID:12904583  
PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17967808   PMID:18188647   PMID:18799693   PMID:21873635   PMID:22643896   PMID:23375831  
PMID:24006456   PMID:25107907   PMID:25615642   PMID:26554003   PMID:27508872   PMID:30550785   PMID:31040393   PMID:31740596   PMID:31882545   PMID:32293671   PMID:32325033   PMID:32999434  
PMID:33658684   PMID:35304331   PMID:36058918   PMID:36874359  


Genomics

Comparative Map Data
Galnt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398124,958,133 - 125,072,461 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8124,958,130 - 125,072,463 (+)EnsemblGRCm39 Ensembl
GRCm388124,231,394 - 124,345,722 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8124,231,391 - 124,345,724 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl8119,910,841 - 124,345,722 (+)EnsemblGRCm38mm10GRCm38
MGSCv378126,755,294 - 126,869,622 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368127,117,484 - 127,231,812 (+)NCBIMGSCv36mm8
Celera8128,510,317 - 128,631,122 (+)NCBICelera
Cytogenetic Map8E2NCBI
cM Map872.52NCBI
GALNT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381230,057,789 - 230,282,122 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1230,057,990 - 230,282,122 (+)EnsemblGRCh38hg38GRCh38
GRCh371230,193,536 - 230,417,868 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361228,269,651 - 228,484,569 (+)NCBINCBI36Build 36hg18NCBI36
Build 341226,509,762 - 226,724,681NCBI
Celera1203,468,796 - 203,683,606 (+)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1200,802,622 - 200,906,230 (+)NCBIHuRef
CHM1_11231,475,550 - 231,690,433 (+)NCBICHM1_1
T2T-CHM13v2.01229,437,364 - 229,661,641 (+)NCBIT2T-CHM13v2.0
Galnt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81969,110,657 - 69,222,237 (+)NCBIGRCr8
mRatBN7.21952,213,226 - 52,324,816 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1952,213,351 - 52,324,813 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1958,998,617 - 59,110,078 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01959,846,711 - 59,958,202 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01961,925,059 - 62,036,532 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01957,043,858 - 57,115,123 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1957,047,830 - 57,115,132 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01967,730,567 - 67,824,804 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41954,479,961 - 54,529,837 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11954,403,248 - 54,532,495 (+)NCBI
Celera1951,646,020 - 51,695,948 (+)NCBICelera
Cytogenetic Map19q12NCBI
Galnt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554928,103,140 - 8,245,143 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554928,104,334 - 8,245,143 (-)NCBIChiLan1.0ChiLan1.0
GALNT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2118,926,270 - 19,141,630 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1119,118,382 - 19,333,822 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01205,615,072 - 205,830,399 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11210,755,425 - 210,859,867 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1210,750,698 - 210,859,867 (+)Ensemblpanpan1.1panPan2
GALNT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.149,055,753 - 9,243,741 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl48,977,509 - 9,281,048 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha49,047,537 - 9,238,587 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.049,079,878 - 9,271,142 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl49,079,878 - 9,271,118 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.149,090,715 - 9,281,701 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.049,205,484 - 9,396,350 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.049,433,272 - 9,624,403 (-)NCBIUU_Cfam_GSD_1.0
Galnt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934443,730,510 - 43,824,988 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648419,893,513 - 19,990,215 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648419,894,682 - 19,990,214 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALNT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1459,961,259 - 60,141,261 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11459,961,255 - 60,141,379 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21464,772,924 - 64,952,935 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GALNT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12567,324,572 - 67,543,035 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2567,347,697 - 67,543,039 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605569,218,260 - 69,437,159 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Galnt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477519,079,648 - 19,221,562 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477519,080,035 - 19,221,509 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Galnt2
3986 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2239
Count of miRNA genes:716
Interacting mature miRNAs:880
Transcripts:ENSMUST00000034458, ENSMUST00000127664, ENSMUST00000142547, ENSMUST00000142578, ENSMUST00000147911
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
1357494Obsty2_mobesity 2 (mouse)Not determined896245241129745061Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
11532691Sluc38_msusceptibility to lung cancer 38 (mouse)8105033977130127694Mouse
10412273Fcd1_mfunctional capillary density 1 (mouse)Not determined8110415083130127694Mouse
1301316Dntcs1_mdental caries susceptibility 1 (mouse)Not determined8103443553127781786Mouse
11532692Sluc38a_msusceptibility to lung cancer 38a (mouse)8105033977130127694Mouse
26884375Skwq2_mskull length QTL 2, 5 week (mouse)8120726739130027694Mouse
14746994Manh65_mmandible shape 65 (mouse)8106489629130127694Mouse
12880431Fgf23lq2_mFGF23 serum level QTL 2 (mouse)897626632130127694Mouse
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100965309130127694Mouse
4141546Mrdq3_mmodifier of retinal degeneration QTL 3 (mouse)Not determined114439420126055880Mouse
10412274Leci1_mleukocyte endothelial cell interactions 1 (mouse)Not determined8110415083130127694Mouse
12904960Gmmq6_mgastrocnemius muscle mass QTL 6 (mouse)8111481497130127694Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)898390634130127694Mouse
1301481Lith11_mlithogenic gene 11 (mouse)Not determined898563635130127694Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899828531130127694Mouse
12904938Edlmmq7_mextensor digitorum longus muscle mass QTL 7 (mouse)8111481497130127694Mouse
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899828531130127694Mouse

Markers in Region
Galnt2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8E2UniSTS
cM Map8 UniSTS
AI480629  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388124,345,404 - 124,345,542UniSTSGRCm38
MGSCv378126,869,304 - 126,869,442UniSTSGRCm37
Celera8128,630,804 - 128,630,942UniSTS
Cytogenetic Map8E2UniSTS
Whitehead/MRC_RH81443.83UniSTS
UniSTS:236031  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388124,344,607 - 124,344,721UniSTSGRCm38
MGSCv378126,868,507 - 126,868,621UniSTSGRCm37
Celera8128,630,007 - 128,630,121UniSTS
Cytogenetic Map8E2UniSTS
UniSTS:236032  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388124,305,135 - 124,305,434UniSTSGRCm38
MGSCv378126,829,035 - 126,829,334UniSTSGRCm37
Celera8128,588,170 - 128,588,469UniSTS
Cytogenetic Map8E2UniSTS
UniSTS:224852  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388124,240,133 - 124,240,308UniSTSGRCm38
MGSCv378126,764,033 - 126,764,208UniSTSGRCm37
Celera8128,518,892 - 128,519,067UniSTS
Cytogenetic Map8E2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_139272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC114005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF348968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ770019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000034458   ⟹   ENSMUSP00000034458
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8124,958,130 - 125,072,461 (+)Ensembl
GRCm38.p6 Ensembl8124,231,391 - 124,345,722 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127664   ⟹   ENSMUSP00000118564
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8120,637,580 - 125,072,461 (+)Ensembl
GRCm38.p6 Ensembl8119,910,841 - 124,345,722 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142547
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8125,021,842 - 125,050,468 (+)Ensembl
GRCm38.p6 Ensembl8124,295,103 - 124,323,729 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142578
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8124,958,247 - 125,061,049 (+)Ensembl
GRCm38.p6 Ensembl8124,231,508 - 124,334,310 (+)Ensembl
RefSeq Acc Id: ENSMUST00000147911
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8125,022,105 - 125,072,463 (+)Ensembl
GRCm38.p6 Ensembl8124,295,366 - 124,345,724 (+)Ensembl
RefSeq Acc Id: NM_139272   ⟹   NP_644678
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398124,958,133 - 125,072,461 (+)NCBI
GRCm388124,231,394 - 124,345,722 (+)NCBI
MGSCv378126,755,294 - 126,869,622 (+)RGD
Celera8128,510,317 - 128,631,122 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_644678   ⟸   NM_139272
- UniProtKB: Q922K5 (UniProtKB/Swiss-Prot),   Q8BL27 (UniProtKB/Swiss-Prot),   Q7TSI5 (UniProtKB/Swiss-Prot),   Q99ME1 (UniProtKB/Swiss-Prot),   Q6PB93 (UniProtKB/Swiss-Prot),   Q3UA32 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000034458   ⟸   ENSMUST00000034458
RefSeq Acc Id: ENSMUSP00000118564   ⟸   ENSMUST00000127664
Protein Domains
Ricin B lectin   Ricin B-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6PB93-F1-model_v2 AlphaFold Q6PB93 1-570 view protein structure

Promoters
RGD ID:8668623
Promoter ID:EPDNEW_M12342
Type:initiation region
Name:Galnt2_1
Description:Mus musculus polypeptide N-acetylgalactosaminyltransferase 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M12343  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm388124,231,390 - 124,231,450EPDNEW
RGD ID:8668627
Promoter ID:EPDNEW_M12343
Type:initiation region
Name:Galnt2_2
Description:Mus musculus polypeptide N-acetylgalactosaminyltransferase 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M12342  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm388124,231,498 - 124,231,558EPDNEW
RGD ID:6843179
Promoter ID:MM_KWN:56158
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung
Transcripts:OTTMUST00000064568,   OTTMUST00000064571
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368126,755,321 - 126,755,821 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:894694 AgrOrtholog
Ensembl Genes ENSMUSG00000031977
  ENSMUSG00000089704 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSG00000092329 Ensembl
Ensembl Transcript ENSMUST00000034458 ENTREZGENE
  ENSMUST00000034458.9 UniProtKB/Swiss-Prot
Gene3D-CATH 2.80.10.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GalNAc-T UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glyco_trans_2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ricin_B-like_lectins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:108148 UniProtKB/Swiss-Prot
MGD MGI:894694 ENTREZGENE
NCBI Gene 108148 ENTREZGENE
PANTHER N-ACETYLGALACTOSAMINYLTRANSFERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Glycos_transf_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Galnt2 PhenoGen
PROSITE RICIN_B_LECTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RICIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50370 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF53448 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt GALT2_MOUSE UniProtKB/Swiss-Prot
  Q3UA32 ENTREZGENE, UniProtKB/TrEMBL
  Q3UM52_MOUSE UniProtKB/TrEMBL
  Q6PB93 ENTREZGENE
  Q7TSI5 ENTREZGENE
  Q8BL27 ENTREZGENE
  Q922K5 ENTREZGENE
  Q99ME1 ENTREZGENE
UniProt Secondary Q7TSI5 UniProtKB/Swiss-Prot
  Q8BL27 UniProtKB/Swiss-Prot
  Q922K5 UniProtKB/Swiss-Prot
  Q99ME1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-22 Galnt2  polypeptide N-acetylgalactosaminyltransferase 2    UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2  Symbol and/or name change 5135510 APPROVED