DEFB129 (defensin beta 129) - Rat Genome Database

Name: DEFB129
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: DEFB129 (defensin beta 129) Chlorocebus sabaeus

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Symbol:

DEFB129

Name:

defensin beta 129

RGD ID:

18787727

Description:

ASSOCIATED WITH Neurodevelopmental Disorders (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

beta-defensin 129

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DEFB129 (defensin beta 129)	NCBI	Ortholog
Mus musculus (house mouse):	Defb23 (defensin beta 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Defb23 (defensin beta 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Defb129 (defensin beta 129)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DEFB129 (defensin beta 129)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DEFB129 (defensin beta 129)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Defb129 (defensin beta 129)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DEFB129 (defensin beta 129)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	35,343,485 - 35,346,371 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	35,343,814 - 35,346,259 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666078	7,513,491 - 7,516,173 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

DEFB129
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	35,343,485 - 35,346,371 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	35,343,814 - 35,346,259 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666078	7,513,491 - 7,516,173 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

DEFB129
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	227,258 - 229,886 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	227,258 - 229,886 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	207,899 - 210,527 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	155,925 - 158,527 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	155,924 - 158,527	NCBI
Celera	20	302,755 - 305,357 (+)	NCBI		Celera
Cytogenetic Map	20	p13	NCBI
HuRef	20	158,770 - 161,398 (+)	NCBI		HuRef
CHM1_1	20	207,920 - 210,548 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	269,795 - 272,423 (+)	NCBI		T2T-CHM13v2.0

Defb23
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	152,300,914 - 152,306,540 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	152,300,975 - 152,306,540 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	152,459,055 - 152,464,620 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	152,459,055 - 152,464,620 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	152,284,791 - 152,290,356 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	152,150,591 - 152,156,033 (-)	NCBI		MGSCv36	mm8
Celera	2	158,273,577 - 158,280,132 (-)	NCBI		Celera
Cytogenetic Map	2	H1	NCBI
cM Map	2	75.08	NCBI

Defb23
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	161,383,615 - 161,390,685 (-)	NCBI		GRCr8
mRatBN7.2	3	140,923,474 - 140,927,715 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	140,923,474 - 140,927,686 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	144,828,645 - 144,832,857 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	153,412,494 - 153,416,706 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	151,152,564 - 151,156,775 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	147,928,201 - 147,932,413 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	147,928,201 - 147,932,413 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	154,275,191 - 154,279,834 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	142,780,126 - 142,784,338 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	139,675,077 - 139,679,269 (-)	NCBI		Celera
Cytogenetic Map	3	q41	NCBI

Defb129
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955597	116,468 - 119,192 (+)	NCBI	ChiLan1.0	ChiLan1.0

DEFB129
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	1,302,328 - 1,304,987 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	1,299,155 - 1,301,814 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	424,889 - 427,540 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	200,339 - 202,990 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	200,339 - 202,990 (+)	Ensembl	panpan1.1		panPan2

DEFB129
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	20,614,030 - 20,616,415 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	20,613,854 - 20,616,432 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	20,266,995 - 20,269,380 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	21,307,673 - 21,310,051 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	21,307,625 - 21,310,051 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	20,583,737 - 20,586,323 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	20,688,994 - 20,691,557 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	21,119,678 - 21,122,056 (-)	NCBI		UU_Cfam_GSD_1.0

Defb129
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	169,791,340 - 169,794,208 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936485	18,222,704 - 18,225,572 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DEFB129
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	34,939,180 - 34,942,357 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	34,939,180 - 34,942,357 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	39,771,402 - 39,772,000 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

hemolymphoid system	mesenchyme	mesoderm
17	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008019783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000010975 ⟹ ENSCSAP00000009059

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	2	35,343,814 - 35,346,259 (+)	Ensembl

RefSeq Acc Id:

XM_008019783 ⟹ XP_008017974

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	2	35,343,485 - 35,346,371 (+)	NCBI
Vero_WHO_p1.0	NW_023666078	7,513,491 - 7,516,173 (+)	NCBI

Sequence:

show sequence

TCACGCCACTGCACTCCAGCCTGGGCAACAAAGTAAGACTCCATCTCAAAAAAACAAAAGAGAG
AGACATGCAAATGGCTTGCTCTTTCTTTCTTATCTTACATATCTTATGTTTTCCTCCAGGATCA
AGAGCAAGAAATTTGTTGCATAGAGGTGTTTAGGAGAGGGTGTTTTCAAACAGTCAGAAAAAAC
ACAACTACGGTGAGCAGCACACAAACCTGCTTTGACTGCACTTCACTGCTCATGGCCTAAGGCC
ATGAAGAGGCCAATAAAGGCTAGAGCTCAGGAGCATCAACCCAGATCCAGGGCTTCCTCTCTGG
CACCCAACCATGAAGCTCCTTTTTCCTATCTTTGCCAGCCTCATGCTACAGTACCAGGTGAACA
CAGAATTGATTGGCTTGAGAAGCTGTTTAATGGGTTTTGGGAGATGCAGGGATCACTGCAATGT
GGACGAAAAAGAGATACAGAAATGCAAGATGAAAAAATGTTGTGTTGGACCAAAAGTGGTTAAA
TTGATTAAAAACTACCTGCAATATGGAACACCCAATGTGCTTAATGAAGACATCCAAGAGATGC
TAAAACCTGCCAAGAATTCTAGTGCTGTGATACAAAGAAAACATATTTTGTCTGTTCTCCCCCA
AATCAAAAGCACTAGCTTTTTTGCTAATACCAACCTTGTCATCGTTCCAAATGCCACGCCTGTG
AACTCTGCCACCGTCAGCACCATGACCTCAGGACAGATCACATACACTGCTACTTCTACCAAGA
GTAACACCAAAGAAAGCGGAGATTCTGCCACTGCCTCCCCACCACCAGCACCACCTCCACCAAA
CATACTGCCAACACCATCACTGGAGCTGGAGGAAGCAGAAGAGCAGTAATGGGGATCTTTCCCT
TAAAACTTAAAAGTTTCAAGTTCCTCTCTATTTTTGCTATCTATAAAATGACATAGAACTCTTT
CCTCTGTCATCAGTCATTCAATAAACACTGTTT

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Protein Sequences


Protein RefSeqs	XP_008017974	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000009059.1

RefSeq Acc Id:	XP_008017974 ⟸ XM_008019783
- UniProtKB:	A0A0D9RKC0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000009059 ⟸ ENSCSAT00000010975

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000012886	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000010975.1	UniProtKB/TrEMBL
KEGG Report	csab:103247709	UniProtKB/TrEMBL
NCBI Gene	DEFB129	ENTREZGENE
UniProt	A0A0D9RKC0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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