DEFB129 (defensin beta 129) - Rat Genome Database

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Gene: DEFB129 (defensin beta 129) Canis lupus familiaris
Analyze
Symbol: DEFB129
Name: defensin beta 129
RGD ID: 12221157
Description: ASSOCIATED WITH Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: beta-defensin 129; CBD129
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12420,614,030 - 20,616,415 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2420,613,854 - 20,616,432 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2420,266,995 - 20,269,380 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02421,307,673 - 21,310,051 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2421,307,625 - 21,310,051 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12420,583,737 - 20,586,323 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02420,688,994 - 20,691,557 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02421,119,678 - 21,122,056 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:16033865  


Genomics

Comparative Map Data
DEFB129
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12420,614,030 - 20,616,415 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2420,613,854 - 20,616,432 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2420,266,995 - 20,269,380 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02421,307,673 - 21,310,051 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2421,307,625 - 21,310,051 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12420,583,737 - 20,586,323 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02420,688,994 - 20,691,557 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02421,119,678 - 21,122,056 (-)NCBIUU_Cfam_GSD_1.0
DEFB129
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3820227,258 - 229,886 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl20227,258 - 229,886 (+)EnsemblGRCh38hg38GRCh38
GRCh3720207,899 - 210,527 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3620155,925 - 158,527 (+)NCBINCBI36Build 36hg18NCBI36
Build 3420155,924 - 158,527NCBI
Celera20302,755 - 305,357 (+)NCBICelera
Cytogenetic Map20p13NCBI
HuRef20158,770 - 161,398 (+)NCBIHuRef
CHM1_120207,920 - 210,548 (+)NCBICHM1_1
T2T-CHM13v2.020269,795 - 272,423 (+)NCBIT2T-CHM13v2.0
Defb23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392152,300,914 - 152,306,540 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2152,300,975 - 152,306,540 (-)EnsemblGRCm39 Ensembl
GRCm382152,459,055 - 152,464,620 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2152,459,055 - 152,464,620 (-)EnsemblGRCm38mm10GRCm38
MGSCv372152,284,791 - 152,290,356 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362152,150,591 - 152,156,033 (-)NCBIMGSCv36mm8
Celera2158,273,577 - 158,280,132 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map275.08NCBI
Defb23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83161,383,615 - 161,390,685 (-)NCBIGRCr8
mRatBN7.23140,923,474 - 140,927,715 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3140,923,474 - 140,927,686 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3144,828,645 - 144,832,857 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03153,412,494 - 153,416,706 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03151,152,564 - 151,156,775 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03147,928,201 - 147,932,413 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,928,201 - 147,932,413 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03154,275,191 - 154,279,834 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43142,780,126 - 142,784,338 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3139,675,077 - 139,679,269 (-)NCBICelera
Cytogenetic Map3q41NCBI
Defb129
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955597116,468 - 119,192 (+)NCBIChiLan1.0ChiLan1.0
DEFB129
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2211,302,328 - 1,304,987 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1201,299,155 - 1,301,814 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v020424,889 - 427,540 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.120200,339 - 202,990 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl20200,339 - 202,990 (+)Ensemblpanpan1.1panPan2
Defb129
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640169,791,340 - 169,794,208 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493648518,222,704 - 18,225,572 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DEFB129
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1734,939,180 - 34,942,357 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11734,939,180 - 34,942,357 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21739,771,402 - 39,772,000 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DEFB129
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1235,343,485 - 35,346,371 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl235,343,814 - 35,346,259 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660787,513,491 - 7,516,173 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in DEFB129
28 total Variants

Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCAFT00000011190   ⟹   ENSCAFP00000010366
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2420,613,854 - 20,616,432 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845030641   ⟹   ENSCAFP00845024043
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2421,307,625 - 21,310,051 (-)Ensembl
RefSeq Acc Id: NM_001284488   ⟹   NP_001271417
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12420,614,030 - 20,616,415 (-)NCBI
Dog10K_Boxer_Tasha2420,266,995 - 20,269,380 (-)NCBI
ROS_Cfam_1.02421,307,673 - 21,310,051 (-)NCBI
UMICH_Zoey_3.12420,583,737 - 20,586,323 (-)NCBI
UNSW_CanFamBas_1.02420,688,994 - 20,691,557 (-)NCBI
UU_Cfam_GSD_1.02421,119,678 - 21,122,056 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001271417 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAY59735 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000010366.2
  ENSCAFP00030012513.1
  ENSCAFP00040033723.1
  ENSCAFP00845024043.1
RefSeq Acc Id: NP_001271417   ⟸   NM_001284488
- Peptide Label: precursor
- UniProtKB: Q30KS5 (UniProtKB/TrEMBL),   A0A8C0JS40 (UniProtKB/TrEMBL),   A0A8C0MJ06 (UniProtKB/TrEMBL),   A0A8I3P252 (UniProtKB/TrEMBL),   A0A8P0N9D1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000010366   ⟸   ENSCAFT00000011190
Ensembl Acc Id: ENSCAFP00845024043   ⟸   ENSCAFT00845030641


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006980 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030007809 UniProtKB/TrEMBL
  ENSCAFG00040020866 UniProtKB/TrEMBL
  ENSCAFG00845017303 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000011190.3 UniProtKB/TrEMBL
  ENSCAFT00030014348.1 UniProtKB/TrEMBL
  ENSCAFT00040038662.1 UniProtKB/TrEMBL
  ENSCAFT00845030641.1 UniProtKB/TrEMBL
KEGG Report cfa:100683229 UniProtKB/TrEMBL
NCBI Gene DEFB129 ENTREZGENE
UniProt A0A8C0JS40 ENTREZGENE
  A0A8C0MJ06 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TBK3_CANLF UniProtKB/TrEMBL
  A0A8I3P252 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0N9D1 ENTREZGENE, UniProtKB/TrEMBL
  Q30KS5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:39882 ENTREZGENE