IFNAR2 (interferon alpha and beta receptor subunit 2) - Rat Genome Database

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Gene: IFNAR2 (interferon alpha and beta receptor subunit 2) Chlorocebus sabaeus
Analyze
Symbol: IFNAR2
Name: interferon alpha and beta receptor subunit 2
RGD ID: 18786918
Description: ENCODES a protein that exhibits type I interferon binding (ortholog); INVOLVED IN immature T cell proliferation in thymus (ortholog); regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); COVID-19 (ortholog); FOUND IN extracellular space (ortholog); receptor complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: interferon alpha/beta receptor 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1258,920,237 - 58,954,809 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl258,918,433 - 58,954,790 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660711,425,941 - 1,461,771 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
IFNAR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1258,920,237 - 58,954,809 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl258,918,433 - 58,954,790 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660711,425,941 - 1,461,771 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
IFNAR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382133,229,938 - 33,265,664 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2133,205,282 - 33,265,675 (+)EnsemblGRCh38hg38GRCh38
GRCh372134,602,243 - 34,637,969 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362133,524,101 - 33,558,697 (+)NCBINCBI36Build 36hg18NCBI36
Build 342133,524,100 - 33,558,688NCBI
Celera2119,788,236 - 19,822,836 (+)NCBICelera
Cytogenetic Map21q22.11ENTREZGENE
HuRef2120,067,860 - 20,102,189 (+)NCBIHuRef
CHM1_12134,164,903 - 34,199,471 (+)NCBICHM1_1
T2T-CHM13v2.02131,598,696 - 31,634,459 (+)NCBIT2T-CHM13v2.0
Ifnar2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391691,166,517 - 91,202,477 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1691,169,671 - 91,202,477 (+)EnsemblGRCm39 Ensembl
GRCm381691,372,783 - 91,405,589 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1691,372,783 - 91,405,589 (+)EnsemblGRCm38mm10GRCm38
MGSCv371691,373,028 - 91,405,832 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361691,261,758 - 91,294,225 (+)NCBIMGSCv36mm8
Celera1692,451,900 - 92,484,695 (+)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1652.82NCBI
Ifnar2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81144,099,574 - 44,131,941 (+)NCBIGRCr8
mRatBN7.21130,613,576 - 30,645,958 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1130,613,767 - 30,668,124 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01131,527,790 - 31,559,834 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1131,539,016 - 31,558,851 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01135,136,856 - 35,168,813 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1130,280,775 - 30,314,002 (+)NCBICelera
Cytogenetic Map11q11NCBI
Ifnar2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540732,601,826 - 32,638,564 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540732,601,862 - 32,637,852 (+)NCBIChiLan1.0ChiLan1.0
IFNAR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22229,343,455 - 29,379,096 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12124,203,581 - 24,239,153 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02119,593,032 - 19,628,651 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12132,981,428 - 33,004,837 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2132,981,428 - 33,004,062 (+)Ensemblpanpan1.1panPan2
IFNAR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13127,860,094 - 27,891,361 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3127,854,331 - 27,885,884 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03128,064,949 - 28,096,366 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3128,064,970 - 28,095,572 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13127,932,348 - 27,963,742 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03127,942,341 - 27,973,809 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03128,445,466 - 28,477,031 (+)NCBIUU_Cfam_GSD_1.0
Ifnar2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497128,376,205 - 28,407,415 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365009,060,182 - 9,091,661 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365009,060,975 - 9,091,618 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFNAR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13196,766,087 - 196,852,635 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113196,765,915 - 196,852,640 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Ifnar2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474521,433,758 - 21,468,889 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474521,434,234 - 21,470,099 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in IFNAR2
566 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000007820   ⟹   ENSCSAP00000005985
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl258,918,433 - 58,954,790 (-)Ensembl
RefSeq Acc Id: XM_007964643   ⟹   XP_007962834
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1258,920,878 - 58,954,474 (-)NCBI
Vero_WHO_p1.0NW_0236660711,425,941 - 1,461,456 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007964647   ⟹   XP_007962838
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1258,920,237 - 58,954,809 (-)NCBI
Vero_WHO_p1.0NW_0236660711,425,941 - 1,461,771 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007964662   ⟹   XP_007962853
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1258,921,994 - 58,954,809 (-)NCBI
Vero_WHO_p1.0NW_0236660711,429,004 - 1,461,771 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037990602   ⟹   XP_037846530
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660711,425,941 - 1,461,771 (-)NCBI
RefSeq Acc Id: XM_037990603   ⟹   XP_037846531
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660711,429,004 - 1,461,771 (-)NCBI
RefSeq Acc Id: XM_037990604   ⟹   XP_037846532
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660711,429,146 - 1,461,771 (-)NCBI
RefSeq Acc Id: XM_037990605   ⟹   XP_037846533
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660711,425,952 - 1,461,771 (-)NCBI
RefSeq Acc Id: XP_007962838   ⟸   XM_007964647
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RBJ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007962834   ⟸   XM_007964643
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007962853   ⟸   XM_007964662
- Peptide Label: isoform X5
Ensembl Acc Id: ENSCSAP00000005985   ⟸   ENSCSAT00000007820
RefSeq Acc Id: XP_037846530   ⟸   XM_037990602
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037846533   ⟸   XM_037990605
- Peptide Label: isoform X7
RefSeq Acc Id: XP_037846531   ⟸   XM_037990603
- Peptide Label: isoform X4
RefSeq Acc Id: XP_037846532   ⟸   XM_037990604
- Peptide Label: isoform X6


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000009735 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000007820.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Interferon/interleukin_rcp_dom UniProtKB/TrEMBL
  Type-II_Cytokine-TF_Rcpt UniProtKB/TrEMBL
NCBI Gene IFNAR2 ENTREZGENE
PANTHER INTERFERON ALPHA/BETA RECEPTOR 2 UniProtKB/TrEMBL
  INTERFERON/INTERLEUKIN RECEPTOR UniProtKB/TrEMBL
Pfam Interfer-bind UniProtKB/TrEMBL
  Tissue_fac UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
UniProt A0A0D9RBJ6 ENTREZGENE, UniProtKB/TrEMBL