Ifnar2 (interferon alpha and beta receptor subunit 2) - Rat Genome Database

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Gene: Ifnar2 (interferon alpha and beta receptor subunit 2) Rattus norvegicus
Analyze
Symbol: Ifnar2
Name: interferon alpha and beta receptor subunit 2
RGD ID: 1583177
Description: Predicted to enable cytokine receptor activity; protein kinase binding activity; and type I interferon binding activity. Predicted to be involved in several processes, including cellular response to interferon-beta; defense response to symbiont; and receptor signaling pathway via JAK-STAT. Predicted to act upstream of or within immature T cell proliferation in thymus and regulation of transcription by RNA polymerase II. Predicted to be located in extracellular space and plasma membrane. Human ortholog(s) of this gene implicated in hepatitis B and immunodeficiency 45. Orthologous to human IFNAR2 (interferon alpha and beta receptor subunit 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: interferon (alpha, beta and omega) receptor 2; interferon alpha/beta receptor 2; LOC686326; similar to Interferon-alpha/beta receptor beta chain precursor (IFN-alpha-REC) (Type I interferon receptor) (IFN-R) (Interferon alpha/beta receptor-2)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81144,099,574 - 44,131,941 (+)NCBIGRCr8
mRatBN7.21130,613,576 - 30,645,958 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1130,613,767 - 30,668,124 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01131,527,790 - 31,559,834 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1131,539,016 - 31,558,851 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01135,136,856 - 35,168,813 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1130,280,775 - 30,314,002 (+)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
caffeine  (ISO)
chloroprene  (ISO)
cisplatin  (ISO)
clotrimazole  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
curcumin  (ISO)
cyproconazole  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
dicrotophos  (ISO)
disodium selenite  (ISO)
epoxiconazole  (ISO)
flutamide  (EXP)
FR900359  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
glyphosate  (ISO)
lead diacetate  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
nickel atom  (ISO)
panobinostat  (ISO)
paracetamol  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
PhIP  (EXP)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
propiconazole  (EXP,ISO)
resveratrol  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (ISO)
tributylstannane  (ISO)
triphenyl phosphate  (EXP)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7665574   PMID:7759950   PMID:9295335   PMID:9322767   PMID:11154225   PMID:24006456   PMID:26424569  


Genomics

Comparative Map Data
Ifnar2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81144,099,574 - 44,131,941 (+)NCBIGRCr8
mRatBN7.21130,613,576 - 30,645,958 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1130,613,767 - 30,668,124 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01131,527,790 - 31,559,834 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1131,539,016 - 31,558,851 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01135,136,856 - 35,168,813 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1130,280,775 - 30,314,002 (+)NCBICelera
Cytogenetic Map11q11NCBI
IFNAR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382133,229,938 - 33,265,664 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2133,205,282 - 33,265,675 (+)EnsemblGRCh38hg38GRCh38
GRCh372134,602,243 - 34,637,969 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362133,524,101 - 33,558,697 (+)NCBINCBI36Build 36hg18NCBI36
Build 342133,524,100 - 33,558,688NCBI
Celera2119,788,236 - 19,822,836 (+)NCBICelera
Cytogenetic Map21q22.11ENTREZGENE
HuRef2120,067,860 - 20,102,189 (+)NCBIHuRef
CHM1_12134,164,903 - 34,199,471 (+)NCBICHM1_1
T2T-CHM13v2.02131,598,696 - 31,634,459 (+)NCBIT2T-CHM13v2.0
Ifnar2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391691,166,517 - 91,202,477 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1691,169,671 - 91,202,477 (+)EnsemblGRCm39 Ensembl
GRCm381691,372,783 - 91,405,589 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1691,372,783 - 91,405,589 (+)EnsemblGRCm38mm10GRCm38
MGSCv371691,373,028 - 91,405,832 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361691,261,758 - 91,294,225 (+)NCBIMGSCv36mm8
Celera1692,451,900 - 92,484,695 (+)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1652.82NCBI
Ifnar2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540732,601,826 - 32,638,564 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540732,601,862 - 32,637,852 (+)NCBIChiLan1.0ChiLan1.0
IFNAR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22229,343,455 - 29,379,096 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12124,203,581 - 24,239,153 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02119,593,032 - 19,628,651 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12132,981,428 - 33,004,837 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2132,981,428 - 33,004,062 (+)Ensemblpanpan1.1panPan2
IFNAR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13127,860,094 - 27,891,361 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3127,854,331 - 27,885,884 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03128,064,949 - 28,096,366 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3128,064,970 - 28,095,572 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13127,932,348 - 27,963,742 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03127,942,341 - 27,973,809 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03128,445,466 - 28,477,031 (+)NCBIUU_Cfam_GSD_1.0
Ifnar2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497128,376,205 - 28,407,415 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365009,060,182 - 9,091,661 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365009,060,975 - 9,091,618 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFNAR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13196,766,087 - 196,852,635 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113196,765,915 - 196,852,640 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
IFNAR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1258,920,237 - 58,954,809 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl258,918,433 - 58,954,790 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660711,425,941 - 1,461,771 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ifnar2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474521,433,758 - 21,468,889 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474521,434,234 - 21,470,099 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ifnar2
159 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:37
Count of miRNA genes:34
Interacting mature miRNAs:37
Transcripts:ENSRNOT00000072856
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat

Markers in Region
D11Rat110  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,622,918 - 30,623,084 (+)MAPPERmRatBN7.2
Rnor_6.01131,536,471 - 31,536,636NCBIRnor6.0
Rnor_5.01135,145,450 - 35,145,615UniSTSRnor5.0
Celera1130,290,942 - 30,291,107UniSTS
SHRSP x BN Map119.3499RGD
SHRSP x BN Map119.3499UniSTS
AW534327  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,615,490 - 30,615,675 (+)MAPPERmRatBN7.2
Rnor_6.01131,529,326 - 31,529,510NCBIRnor6.0
Rnor_5.01135,138,305 - 35,138,489UniSTSRnor5.0
Celera1130,282,311 - 30,282,495UniSTS
RH 3.4 Map11179.4UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 41 57 41 19 41 1 1 69 32 34 11 1
Low 2 7 10 5 3 7 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000072856   ⟹   ENSRNOP00000065773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1130,613,767 - 30,668,124 (+)Ensembl
Rnor_6.0 Ensembl1131,539,016 - 31,558,851 (+)Ensembl
RefSeq Acc Id: NM_001426990   ⟹   NP_001413919
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,099,770 - 44,131,941 (+)NCBI
RefSeq Acc Id: NM_001426991   ⟹   NP_001413920
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,099,770 - 44,121,073 (+)NCBI
RefSeq Acc Id: XM_039088781   ⟹   XP_038944709
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,121,821 - 44,131,940 (+)NCBI
mRatBN7.21130,635,837 - 30,645,958 (+)NCBI
RefSeq Acc Id: XR_005491215
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,099,575 - 44,130,134 (+)NCBI
mRatBN7.21130,613,583 - 30,640,206 (+)NCBI
RefSeq Acc Id: XR_005491216
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,099,574 - 44,130,134 (+)NCBI
mRatBN7.21130,613,585 - 30,644,138 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001413919 (Get FASTA)   NCBI Sequence Viewer  
  NP_001413920 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944709 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM10714 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000065773.2
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000065773   ⟸   ENSRNOT00000072856
RefSeq Acc Id: XP_038944709   ⟸   XM_039088781
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001413919   ⟸   NM_001426990
- Peptide Label: isoform 1 precursor
- UniProtKB: A6JLE9 (UniProtKB/TrEMBL),   M0R8H7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001413920   ⟸   NM_001426991
- Peptide Label: isoform 2 precursor
- UniProtKB: A6JLF0 (UniProtKB/TrEMBL)
Protein Domains
Fibronectin type-III   Interferon/interleukin receptor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R8H7-F1-model_v2 AlphaFold M0R8H7 1-516 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1583177 AgrOrtholog
BioCyc Gene G2FUF-21895 BioCyc
Ensembl Genes ENSRNOG00000045668 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000072856.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Fibronectin_type3 UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Interferon_alpha/beta_rcpt_bsu UniProtKB/TrEMBL
KEGG Report rno:686326 UniProtKB/TrEMBL
NCBI Gene 686326 ENTREZGENE
PANTHER INTERFERON ALPHA/BETA RECEPTOR 2 UniProtKB/TrEMBL
  INTERFERON/INTERLEUKIN RECEPTOR UniProtKB/TrEMBL
Pfam Interfer-bind UniProtKB/TrEMBL
  Tissue_fac UniProtKB/TrEMBL
PhenoGen Ifnar2 PhenoGen
RatGTEx ENSRNOG00000045668 RatGTEx
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
UniProt A6JLE9 ENTREZGENE, UniProtKB/TrEMBL
  A6JLF0 ENTREZGENE, UniProtKB/TrEMBL
  M0R8H7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-03 Ifnar2  interferon alpha and beta receptor subunit 2  Ifnar2  interferon (alpha, beta and omega) receptor 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-16 Ifnar2  interferon (alpha, beta and omega) receptor 2  LOC686326  similar to Interferon-alpha/beta receptor beta chain precursor (IFN-alpha-REC) (Type I interferon receptor) (IFN-R) (Interferon alpha/beta receptor-2)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC686326  similar to Interferon-alpha/beta receptor beta chain precursor (IFN-alpha-REC) (Type I interferon receptor) (IFN-R) (Interferon alpha/beta receptor-2)      Symbol and Name status set to provisional 70820 PROVISIONAL