SH3BP5L (SH3 binding domain protein 5 like) - Rat Genome Database

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Gene: SH3BP5L (SH3 binding domain protein 5 like) Chlorocebus sabaeus
Analyze
Symbol: SH3BP5L
Name: SH3 binding domain protein 5 like
RGD ID: 18777269
Description: ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (inferred); protein kinase inhibitor activity (inferred); SH3 domain binding (inferred); INVOLVED IN intracellular signal transduction (inferred); ASSOCIATED WITH developmental and epileptic encephalopathy 54 (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SH3 domain-binding protein 5-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12585,654,598 - 85,669,989 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2585,653,098 - 85,669,960 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605588,283,050 - 88,299,258 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SH3BP5L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12585,654,598 - 85,669,989 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2585,653,098 - 85,669,960 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605588,283,050 - 88,299,258 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SH3BP5L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381248,810,446 - 248,825,915 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1248,810,446 - 248,825,915 (-)EnsemblGRCh38hg38GRCh38
GRCh371249,104,645 - 249,120,114 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361247,071,274 - 247,086,777 (-)NCBINCBI36Build 36hg18NCBI36
Celera1222,266,041 - 222,281,391 (-)NCBICelera
Cytogenetic Map1q44NCBI
HuRef1219,345,673 - 219,361,176 (-)NCBIHuRef
CHM1_11250,376,948 - 250,392,447 (-)NCBICHM1_1
T2T-CHM13v2.01248,248,930 - 248,264,398 (-)NCBIT2T-CHM13v2.0
Sh3bp5l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391158,221,533 - 58,238,554 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1158,221,550 - 58,238,554 (+)EnsemblGRCm39 Ensembl
GRCm381158,330,707 - 58,347,728 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1158,330,724 - 58,347,728 (+)EnsemblGRCm38mm10GRCm38
MGSCv371158,144,220 - 58,161,230 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361158,146,945 - 58,163,920 (+)NCBIMGSCv36mm8
Celera1163,081,862 - 63,099,144 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1136.19NCBI
Sh3bp5l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81043,012,902 - 43,027,319 (+)NCBIGRCr8
mRatBN7.21042,512,437 - 42,529,564 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1042,512,552 - 42,530,221 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1047,177,023 - 47,191,376 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01046,667,468 - 46,681,819 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01042,170,979 - 42,185,328 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01043,768,620 - 43,785,702 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1043,768,708 - 43,783,019 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01043,561,167 - 43,575,477 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41043,969,245 - 43,983,533 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1041,803,607 - 41,818,958 (+)NCBICelera
Cytogenetic Map10q22NCBI
Sh3bp5l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541829,883,513 - 29,893,771 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541829,884,660 - 29,893,611 (-)NCBIChiLan1.0ChiLan1.0
SH3BP5L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21212,249 - 235,805 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11483,977 - 505,977 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01224,453,925 - 224,470,497 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SH3BP5L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11613,709,586 - 13,723,908 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1613,710,806 - 13,723,482 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1611,485,154 - 11,498,499 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01613,687,854 - 13,701,197 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1613,686,888 - 13,700,865 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11610,828,509 - 10,841,843 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01613,222,318 - 13,235,470 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01613,398,247 - 13,411,591 (-)NCBIUU_Cfam_GSD_1.0
Sh3bp5l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721391,849,583 - 91,861,944 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936609572,250 - 584,876 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936609571,600 - 584,572 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SH3BP5L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl252,323,048 - 52,339,665 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1252,323,009 - 52,337,198 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2255,222,834 - 55,237,004 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sh3bp5l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624743723,876 - 732,830 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624743723,876 - 732,595 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000006991   ⟹   ENSCSAP00000005187
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2585,653,098 - 85,669,960 (-)Ensembl
RefSeq Acc Id: XM_007990139   ⟹   XP_007988330
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12585,654,598 - 85,669,989 (-)NCBI
Vero_WHO_p1.0NW_02366605588,283,050 - 88,299,258 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007988330 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000005187
  ENSCSAP00000005187.1
RefSeq Acc Id: XP_007988330   ⟸   XM_007990139
- UniProtKB: A0A0D9R998 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000005187   ⟸   ENSCSAT00000006991


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008924 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006991.1 UniProtKB/TrEMBL
InterPro SH3BP5 UniProtKB/TrEMBL
KEGG Report csab:103230988 UniProtKB/TrEMBL
NCBI Gene SH3BP5L ENTREZGENE
PANTHER PTHR19423 UniProtKB/TrEMBL
  SH3 DOMAIN-BINDING PROTEIN 5-LIKE UniProtKB/TrEMBL
Pfam SH3BP5 UniProtKB/TrEMBL
UniProt A0A0D9R998 ENTREZGENE, UniProtKB/TrEMBL