SH3BP5L (SH3 binding domain protein 5 like) - Rat Genome Database

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Gene: SH3BP5L (SH3 binding domain protein 5 like) Pan paniscus
Analyze
Symbol: SH3BP5L
Name: SH3 binding domain protein 5 like
RGD ID: 11899497
Description: ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (inferred); protein kinase inhibitor activity (inferred); SH3 domain binding (inferred); INVOLVED IN intracellular signal transduction (inferred); ASSOCIATED WITH developmental and epileptic encephalopathy 54 (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SH3 domain-binding protein 5-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21212,249 - 235,805 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11483,977 - 505,977 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01224,453,925 - 224,470,497 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SH3BP5L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21212,249 - 235,805 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11483,977 - 505,977 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01224,453,925 - 224,470,497 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SH3BP5L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381248,810,446 - 248,825,915 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1248,810,446 - 248,825,915 (-)EnsemblGRCh38hg38GRCh38
GRCh371249,104,645 - 249,120,114 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361247,071,274 - 247,086,777 (-)NCBINCBI36Build 36hg18NCBI36
Celera1222,266,041 - 222,281,391 (-)NCBICelera
Cytogenetic Map1q44NCBI
HuRef1219,345,673 - 219,361,176 (-)NCBIHuRef
CHM1_11250,376,948 - 250,392,447 (-)NCBICHM1_1
T2T-CHM13v2.01248,248,930 - 248,264,398 (-)NCBIT2T-CHM13v2.0
Sh3bp5l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391158,221,533 - 58,238,554 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1158,221,550 - 58,238,554 (+)EnsemblGRCm39 Ensembl
GRCm381158,330,707 - 58,347,728 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1158,330,724 - 58,347,728 (+)EnsemblGRCm38mm10GRCm38
MGSCv371158,144,220 - 58,161,230 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361158,146,945 - 58,163,920 (+)NCBIMGSCv36mm8
Celera1163,081,862 - 63,099,144 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1136.19NCBI
Sh3bp5l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81043,012,902 - 43,027,319 (+)NCBIGRCr8
mRatBN7.21042,512,437 - 42,529,564 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1042,512,552 - 42,530,221 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1047,177,023 - 47,191,376 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01046,667,468 - 46,681,819 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01042,170,979 - 42,185,328 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01043,768,620 - 43,785,702 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1043,768,708 - 43,783,019 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01043,561,167 - 43,575,477 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41043,969,245 - 43,983,533 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1041,803,607 - 41,818,958 (+)NCBICelera
Cytogenetic Map10q22NCBI
Sh3bp5l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541829,883,513 - 29,893,771 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541829,884,660 - 29,893,611 (-)NCBIChiLan1.0ChiLan1.0
SH3BP5L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11613,709,586 - 13,723,908 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1613,710,806 - 13,723,482 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1611,485,154 - 11,498,499 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01613,687,854 - 13,701,197 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1613,686,888 - 13,700,865 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11610,828,509 - 10,841,843 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01613,222,318 - 13,235,470 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01613,398,247 - 13,411,591 (-)NCBIUU_Cfam_GSD_1.0
Sh3bp5l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721391,849,583 - 91,861,944 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936609572,250 - 584,876 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936609571,600 - 584,572 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SH3BP5L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl252,323,048 - 52,339,665 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1252,323,009 - 52,337,198 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2255,222,834 - 55,237,004 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SH3BP5L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12585,654,598 - 85,669,989 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2585,653,098 - 85,669,960 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605588,283,050 - 88,299,258 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sh3bp5l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624743723,876 - 732,830 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624743723,876 - 732,595 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_008962629   ⟹   XP_008960877
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21212,249 - 235,805 (+)NCBI
NHGRI_mPanPan11483,977 - 505,977 (+)NCBI
Mhudiblu_PPA_v01224,453,925 - 224,470,497 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024927488   ⟹   XP_024783256
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21231,666 - 235,805 (+)NCBI
NHGRI_mPanPan11501,793 - 505,965 (+)NCBI
Mhudiblu_PPA_v01224,453,930 - 224,469,516 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008960877 (Get FASTA)   NCBI Sequence Viewer  
  XP_024783256 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000019197
  ENSPPAP00000019197.1
  ENSPPAP00000019201.1
RefSeq Acc Id: XP_008960877   ⟸   XM_008962629
- Peptide Label: isoform X1
- UniProtKB: A0A2R9APA4 (UniProtKB/TrEMBL),   A0A2R9APB2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024783256   ⟸   XM_024927488
- Peptide Label: isoform X2
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032768 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000041949.1 UniProtKB/TrEMBL
  ENSPPAT00000041953.1 UniProtKB/TrEMBL
InterPro SH3BP5 UniProtKB/TrEMBL
KEGG Report pps:100992602 UniProtKB/TrEMBL
NCBI Gene SH3BP5L ENTREZGENE
PANTHER PTHR19423 UniProtKB/TrEMBL
  SH3 DOMAIN-BINDING PROTEIN 5-LIKE UniProtKB/TrEMBL
Pfam SH3BP5 UniProtKB/TrEMBL
UniProt A0A2R9APA4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9APB2 ENTREZGENE, UniProtKB/TrEMBL