SF3A1 (splicing factor 3a subunit 1) - Rat Genome Database

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Gene: SF3A1 (splicing factor 3a subunit 1) Chlorocebus sabaeus
Analyze
Symbol: SF3A1
Name: splicing factor 3a subunit 1
RGD ID: 18776372
Description: ENCODES a protein that exhibits RNA binding (inferred); INVOLVED IN mRNA cis splicing, via spliceosome (inferred); mRNA processing (inferred); mRNA splicing, via spliceosome (inferred); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH diffuse large B-cell lymphoma (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11913,213,059 - 13,237,200 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1913,211,275 - 13,237,257 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045112,908,883 - 112,931,008 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SF3A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11913,213,059 - 13,237,200 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1913,211,275 - 13,237,257 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045112,908,883 - 112,931,008 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SF3A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382230,331,988 - 30,356,894 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2230,331,988 - 30,356,919 (-)EnsemblGRCh38hg38GRCh38
GRCh372230,727,977 - 30,752,883 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362229,057,977 - 29,082,913 (-)NCBINCBI36Build 36hg18NCBI36
Build 342229,052,532 - 29,077,467NCBI
Celera2214,527,665 - 14,552,601 (-)NCBICelera
Cytogenetic Map22q12.2NCBI
HuRef2213,689,762 - 13,714,601 (-)NCBIHuRef
CHM1_12230,687,097 - 30,712,033 (-)NCBICHM1_1
T2T-CHM13v2.02230,795,327 - 30,820,234 (-)NCBIT2T-CHM13v2.0
Sf3a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,110,354 - 4,132,541 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,110,350 - 4,132,541 (+)EnsemblGRCm39 Ensembl
GRCm38114,160,354 - 4,182,541 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,160,350 - 4,182,541 (+)EnsemblGRCm38mm10GRCm38
MGSCv37114,060,357 - 4,082,544 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36114,060,371 - 4,080,632 (+)NCBIMGSCv36mm8
Celera114,656,698 - 4,679,484 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.91NCBI
Sf3a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81483,254,971 - 83,275,720 (+)NCBIGRCr8
mRatBN7.21479,031,394 - 79,052,144 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1479,031,394 - 79,052,144 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1483,472,045 - 83,492,783 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01484,712,124 - 84,732,862 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01481,158,029 - 81,178,761 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01484,393,182 - 84,413,931 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1484,393,182 - 84,413,931 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01485,074,847 - 85,095,596 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41484,786,072 - 84,806,825 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11484,805,230 - 84,823,748 (+)NCBI
Celera1477,942,391 - 77,963,140 (+)NCBICelera
Cytogenetic Map14q21NCBI
Sf3a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554554,577,329 - 4,602,141 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554554,579,153 - 4,601,942 (-)NCBIChiLan1.0ChiLan1.0
SF3A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22340,301,250 - 40,324,017 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12242,999,894 - 43,022,639 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02211,369,772 - 11,392,998 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12229,171,654 - 29,194,882 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2229,172,536 - 29,194,735 (-)Ensemblpanpan1.1panPan2
SF3A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12623,485,551 - 23,504,242 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2623,485,797 - 23,504,346 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2623,356,731 - 23,375,424 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02623,869,763 - 23,888,464 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2623,869,765 - 23,888,598 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12623,571,199 - 23,589,903 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02623,834,032 - 23,852,728 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02623,894,392 - 23,913,085 (-)NCBIUU_Cfam_GSD_1.0
Sf3a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118116,405,349 - 116,424,022 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936904309,713 - 332,684 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936904310,182 - 328,882 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SF3A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1447,312,473 - 47,335,370 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11447,312,460 - 47,335,448 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21450,400,016 - 50,419,872 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sf3a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247476,655,037 - 6,679,640 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247476,654,656 - 6,679,525 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007975394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000007548   ⟹   ENSCSAP00000005724
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1913,211,275 - 13,237,257 (-)Ensembl
RefSeq Acc Id: XM_007975394   ⟹   XP_007973585
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11913,213,059 - 13,237,200 (-)NCBI
Vero_WHO_p1.0NW_023666045112,908,883 - 112,931,008 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007973585 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000005724
  ENSCSAP00000005724.1
RefSeq Acc Id: XP_007973585   ⟸   XM_007975394
- UniProtKB: A0A0D9RAT5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000005724   ⟸   ENSCSAT00000007548


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000009470 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000007548.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.790 UniProtKB/TrEMBL
InterPro SF3A1 UniProtKB/TrEMBL
  SF3A1 UniProtKB/TrEMBL
  SF3As1_ubi UniProtKB/TrEMBL
  Surp UniProtKB/TrEMBL
  SWAP/Surp_sf UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
KEGG Report csab:103223162 UniProtKB/TrEMBL
NCBI Gene SF3A1 ENTREZGENE
PANTHER PTHR15316 UniProtKB/TrEMBL
  SPLICING FACTOR 3A SUBUNIT 1 UniProtKB/TrEMBL
Pfam PRP21_like_P UniProtKB/TrEMBL
  Surp UniProtKB/TrEMBL
  ubiquitin UniProtKB/TrEMBL
PROSITE SURP UniProtKB/TrEMBL
  UBIQUITIN_2 UniProtKB/TrEMBL
SMART SWAP UniProtKB/TrEMBL
  UBQ UniProtKB/TrEMBL
Superfamily-SCOP SSF109905 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A0D9RAT5 ENTREZGENE, UniProtKB/TrEMBL