Symbol:
Sf3a1
Name:
splicing factor 3a, subunit 1
RGD ID:
1322958
MGI Page
MGI
Description:
Predicted to enable RNA binding activity. Predicted to be involved in U2-type prespliceosome assembly. Predicted to be located in nuclear speck. Predicted to be part of U2 snRNP and spliceosomal complex. Is expressed in central nervous system and sensory organ. Orthologous to human SF3A1 (splicing factor 3a subunit 1).
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
1200014H24Rik; 5930416L09Rik; AI159724; SF3a120; splicing factor 3 subunit 1; splicing factor 3A subunit 1
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
SF3A1 (splicing factor 3a subunit 1) HGNC
EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):
Sf3a1 (splicing factor 3A subunit 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Sf3a1 (splicing factor 3a subunit 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
SF3A1 (splicing factor 3a subunit 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
SF3A1 (splicing factor 3a subunit 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Sf3a1 (splicing factor 3a subunit 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
SF3A1 (splicing factor 3a subunit 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
SF3A1 (splicing factor 3a subunit 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Sf3a1 (splicing factor 3a subunit 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Alliance orthologs 3
Rattus norvegicus (Norway rat):
Sf3a1 (splicing factor 3A subunit 1)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Homo sapiens (human):
SF3A1 (splicing factor 3a subunit 1)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
sf3a1 (splicing factor 3a, subunit 1)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid|ZFIN)
Saccharomyces cerevisiae (baker's yeast):
PRP21
Alliance
DIOPT (Ensembl Compara|Hieranoid|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB)
Drosophila melanogaster (fruit fly):
Sf3a1
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Caenorhabditis elegans (roundworm):
prp-21
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):
sf3a1
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Related Pseudogenes:
Gm18454
Gm21030
Latest Assembly:
GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 11 4,110,354 - 4,132,541 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 11 4,110,350 - 4,132,541 (+) Ensembl GRCm39 Ensembl GRCm38 11 4,160,354 - 4,182,541 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 11 4,160,350 - 4,182,541 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 11 4,060,357 - 4,082,544 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 11 4,060,371 - 4,080,632 (+) NCBI MGSCv36 mm8 Celera 11 4,656,698 - 4,679,484 (+) NCBI Celera Cytogenetic Map 11 A1 NCBI cM Map 11 2.91 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Sf3a1 Mouse 1,2-dimethylhydrazine multiple interactions EXP 6480464 [1,2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of SF3A1 mRNA CTD PMID:22206623 Sf3a1 Mouse 17alpha-ethynylestradiol multiple interactions EXP 6480464 [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of SF3A1 mRNA CTD PMID:17942748 Sf3a1 Mouse 2,2',4,4'-Tetrabromodiphenyl ether affects expression EXP 6480464 2,2',4,4'-tetrabromodiphenyl ether affects the expression of SF3A1 mRNA CTD PMID:30294300 Sf3a1 Mouse 2,3,7,8-tetrachlorodibenzodioxine multiple interactions EXP 6480464 [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of SF3A1 mRNA; Tetrachlorodibenzodioxin promotes the more ... CTD PMID:17942748|PMID:19654925 Sf3a1 Mouse 2,3,7,8-tetrachlorodibenzodioxine affects expression EXP 6480464 Tetrachlorodibenzodioxin affects the expression of SF3A1 mRNA CTD PMID:21570461 Sf3a1 Mouse 2,4-dinitrotoluene affects expression ISO RGD:1311477 6480464 2,4-dinitrotoluene affects the expression of SF3A1 mRNA CTD PMID:21346803 Sf3a1 Mouse 2,6-dimethoxyphenol multiple interactions ISO RGD:1322957 6480464 [Sodium Chloride co-treated with pyrogallol 1,3-dimethyl ether] results in decreased expression of SF3A1 protein; [Sodium more ... CTD PMID:38598786 Sf3a1 Mouse 2,6-dinitrotoluene affects expression ISO RGD:1311477 6480464 2,6-dinitrotoluene affects the expression of SF3A1 mRNA CTD PMID:21346803 Sf3a1 Mouse 4,4'-diaminodiphenylmethane decreases expression EXP 6480464 4,4'-diaminodiphenylmethane results in decreased expression of SF3A1 mRNA CTD PMID:18648102 Sf3a1 Mouse 4,4'-sulfonyldiphenol increases expression EXP 6480464 bisphenol S results in increased expression of SF3A1 mRNA CTD PMID:39298647 Sf3a1 Mouse 4,4'-sulfonyldiphenol increases expression ISO RGD:1322957 6480464 bisphenol S results in increased expression of SF3A1 protein CTD PMID:34186270 Sf3a1 Mouse 4-amino-2,6-dinitrotoluene affects expression ISO RGD:1311477 6480464 4-amino-2,6-dinitrotoluene affects the expression of SF3A1 mRNA CTD PMID:21346803 Sf3a1 Mouse 4-hydroxyphenyl retinamide increases expression EXP 6480464 Fenretinide results in increased expression of SF3A1 mRNA CTD PMID:28973697 Sf3a1 Mouse aconitine increases expression ISO RGD:1311477 6480464 Aconitine results in increased expression of SF3A1 protein CTD PMID:33236894 Sf3a1 Mouse actinomycin D multiple interactions ISO RGD:1322957 6480464 [Dactinomycin co-treated with nutlin 3] results in increased secretion of SF3A1 protein CTD PMID:38460933 Sf3a1 Mouse aflatoxin B1 increases methylation ISO RGD:1322957 6480464 Aflatoxin B1 results in increased methylation of SF3A1 gene CTD PMID:27153756 Sf3a1 Mouse amitrole decreases expression ISO RGD:1311477 6480464 Amitrole results in decreased expression of SF3A1 mRNA CTD PMID:38685447 Sf3a1 Mouse arsane multiple interactions ISO RGD:1322957 6480464 [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of SF3A1 more ... CTD PMID:39836092 Sf3a1 Mouse arsenic atom multiple interactions ISO RGD:1322957 6480464 [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of SF3A1 more ... CTD PMID:39836092 Sf3a1 Mouse atrazine decreases expression ISO RGD:1322957 6480464 Atrazine results in decreased expression of SF3A1 mRNA CTD PMID:22378314 Sf3a1 Mouse benzo[a]pyrene affects methylation ISO RGD:1322957 6480464 Benzo(a)pyrene affects the methylation of SF3A1 3' UTR CTD PMID:27901495 Sf3a1 Mouse bis(2-ethylhexyl) phthalate increases expression EXP 6480464 Diethylhexyl Phthalate results in increased expression of SF3A1 mRNA CTD PMID:34319233 Sf3a1 Mouse bisphenol A decreases expression EXP 6480464 bisphenol A results in decreased expression of SF3A1 mRNA CTD PMID:33221593 Sf3a1 Mouse bisphenol A increases expression ISO RGD:1311477 6480464 bisphenol A results in increased expression of SF3A1 mRNA CTD PMID:34947998|PMID:38750585 Sf3a1 Mouse bisphenol AF increases expression ISO RGD:1322957 6480464 bisphenol AF results in increased expression of SF3A1 protein CTD PMID:34186270 Sf3a1 Mouse Brodifacoum decreases expression ISO RGD:1311477 6480464 bromfenacoum results in decreased expression of SF3A1 protein CTD PMID:28903499 Sf3a1 Mouse butanal decreases expression ISO RGD:1322957 6480464 butyraldehyde results in decreased expression of SF3A1 mRNA CTD PMID:26079696 Sf3a1 Mouse cadmium atom multiple interactions ISO RGD:1322957 6480464 [Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of SF3A1 more ... CTD PMID:35301059 Sf3a1 Mouse cadmium dichloride decreases expression ISO RGD:1322957 6480464 Cadmium Chloride results in decreased expression of SF3A1 mRNA CTD PMID:38568856 Sf3a1 Mouse cadmium dichloride multiple interactions ISO RGD:1322957 6480464 [Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of SF3A1 more ... CTD PMID:35301059 Sf3a1 Mouse caffeine increases phosphorylation ISO RGD:1322957 6480464 Caffeine results in increased phosphorylation of SF3A1 protein CTD PMID:35688186 Sf3a1 Mouse cannabidiol increases expression ISO RGD:1322957 6480464 Cannabidiol results in increased expression of SF3A1 protein CTD PMID:34122009 Sf3a1 Mouse cisplatin decreases expression ISO RGD:1322957 6480464 Cisplatin results in decreased expression of SF3A1 mRNA CTD PMID:27594783 Sf3a1 Mouse coumarin increases phosphorylation ISO RGD:1322957 6480464 coumarin results in increased phosphorylation of SF3A1 protein CTD PMID:35688186 Sf3a1 Mouse cyclosporin A increases expression ISO RGD:1322957 6480464 Cyclosporine results in increased expression of SF3A1 mRNA CTD PMID:25562108 Sf3a1 Mouse cyclosporin A increases methylation ISO RGD:1322957 6480464 Cyclosporine results in increased methylation of SF3A1 promoter CTD PMID:27989131 Sf3a1 Mouse deoxynivalenol increases expression ISO RGD:1322957 6480464 deoxynivalenol results in increased expression of SF3A1 mRNA CTD PMID:31863870 Sf3a1 Mouse diazinon increases methylation ISO RGD:1322957 6480464 Diazinon results in increased methylation of SF3A1 gene CTD PMID:22964155 Sf3a1 Mouse dicrotophos increases expression ISO RGD:1322957 6480464 dicrotophos results in increased expression of SF3A1 mRNA CTD PMID:28302478 Sf3a1 Mouse disodium selenite increases expression ISO RGD:1322957 6480464 Sodium Selenite results in increased expression of SF3A1 mRNA CTD PMID:18175754 Sf3a1 Mouse dorsomorphin multiple interactions ISO RGD:1322957 6480464 [NOG protein co-treated with methylmercuric chloride co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased more ... CTD PMID:27188386 Sf3a1 Mouse enzyme inhibitor multiple interactions ISO RGD:1322957 6480464 [Enzyme Inhibitors results in decreased activity of OGA protein] which results in increased O-linked glycosylation more ... CTD PMID:23301498 Sf3a1 Mouse epoxiconazole decreases expression EXP 6480464 epoxiconazole results in decreased expression of SF3A1 mRNA CTD PMID:35436446 Sf3a1 Mouse ethanol affects splicing EXP 6480464 Ethanol affects the splicing of SF3A1 mRNA CTD PMID:30319688 Sf3a1 Mouse folic acid multiple interactions EXP 6480464 [1,2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of SF3A1 mRNA CTD PMID:22206623 Sf3a1 Mouse FR900359 increases phosphorylation ISO RGD:1322957 6480464 FR900359 results in increased phosphorylation of SF3A1 protein CTD PMID:37730182 Sf3a1 Mouse glyphosate increases expression ISO RGD:1311477 6480464 Glyphosate results in increased expression of SF3A1 mRNA CTD PMID:26302742 Sf3a1 Mouse GSK-J4 increases expression ISO RGD:1322957 6480464 GSK-J4 results in increased expression of SF3A1 mRNA CTD PMID:29301935 Sf3a1 Mouse hydrogen peroxide multiple interactions EXP 6480464 [Hydrogen Peroxide co-treated with N-(oxo-5,6-dihydrophenanthridin-2-yl)-N,N-dimethylacetamide hydrochloride] results in increased phosphorylation of SF3A1 protein CTD PMID:31494107 Sf3a1 Mouse inulin multiple interactions EXP 6480464 [perfluorooctane sulfonic acid co-treated with Inulin] results in decreased expression of SF3A1 mRNA CTD PMID:36331819 Sf3a1 Mouse ivermectin decreases expression ISO RGD:1322957 6480464 Ivermectin results in decreased expression of SF3A1 protein CTD PMID:32959892 Sf3a1 Mouse methimazole decreases expression ISO RGD:1311477 6480464 Methimazole results in decreased expression of SF3A1 mRNA CTD PMID:38685447 Sf3a1 Mouse methylmercury chloride increases expression ISO RGD:1322957 6480464 methylmercuric chloride results in increased expression of SF3A1 mRNA CTD PMID:23179753|PMID:26272509 Sf3a1 Mouse methylmercury chloride multiple interactions ISO RGD:1322957 6480464 [NOG protein co-treated with methylmercuric chloride co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased more ... CTD PMID:27188386 Sf3a1 Mouse N-methyl-4-phenylpyridinium increases expression EXP 6480464 1-Methyl-4-phenylpyridinium results in increased expression of SF3A1 protein CTD PMID:26558463 Sf3a1 Mouse nitrates multiple interactions EXP 6480464 [Particulate Matter results in increased abundance of Nitrates] which results in increased expression of SF3A1 more ... CTD PMID:35964746 Sf3a1 Mouse Nutlin-3 multiple interactions ISO RGD:1322957 6480464 [Dactinomycin co-treated with nutlin 3] results in increased secretion of SF3A1 protein CTD PMID:38460933 Sf3a1 Mouse paracetamol affects expression EXP 6480464 Acetaminophen affects the expression of SF3A1 mRNA CTD PMID:17562736 Sf3a1 Mouse paracetamol increases expression ISO RGD:1322957 6480464 Acetaminophen results in increased expression of SF3A1 mRNA CTD PMID:22230336 Sf3a1 Mouse perfluorohexanesulfonic acid decreases expression EXP 6480464 perfluorohexanesulfonic acid results in decreased expression of SF3A1 mRNA CTD PMID:37995155 Sf3a1 Mouse perfluorooctane-1-sulfonic acid multiple interactions EXP 6480464 [perfluorooctane sulfonic acid co-treated with Inulin] results in decreased expression of SF3A1 mRNA; [perfluorooctane sulfonic more ... CTD PMID:36331819 Sf3a1 Mouse progesterone increases expression EXP 6480464 Progesterone results in increased expression of SF3A1 mRNA CTD PMID:19693291 Sf3a1 Mouse resveratrol decreases expression EXP 6480464 resveratrol results in decreased expression of SF3A1 protein CTD PMID:25505154 Sf3a1 Mouse resveratrol multiple interactions ISO RGD:1322957 6480464 [Plant Extracts co-treated with Resveratrol] results in decreased expression of SF3A1 mRNA CTD PMID:23557933 Sf3a1 Mouse SB 431542 multiple interactions ISO RGD:1322957 6480464 [NOG protein co-treated with methylmercuric chloride co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased more ... CTD PMID:27188386 Sf3a1 Mouse sodium arsenite increases expression ISO RGD:1322957 6480464 sodium arsenite results in increased expression of SF3A1 mRNA CTD PMID:38568856 Sf3a1 Mouse sodium arsenite multiple interactions ISO RGD:1322957 6480464 [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of SF3A1 more ... CTD PMID:39836092 Sf3a1 Mouse sodium chloride multiple interactions ISO RGD:1322957 6480464 [Sodium Chloride co-treated with pyrogallol 1,3-dimethyl ether] results in decreased expression of SF3A1 protein; [Sodium more ... CTD PMID:38598786 Sf3a1 Mouse testosterone increases expression EXP 6480464 Testosterone results in increased expression of SF3A1 mRNA CTD PMID:19693291 Sf3a1 Mouse thioacetamide increases expression ISO RGD:1311477 6480464 Thioacetamide results in increased expression of SF3A1 mRNA CTD PMID:34492290 Sf3a1 Mouse thiram increases expression ISO RGD:1322957 6480464 Thiram results in increased expression of SF3A1 mRNA CTD PMID:38568856 Sf3a1 Mouse titanium dioxide decreases methylation EXP 6480464 titanium dioxide results in decreased methylation of SF3A1 gene CTD PMID:35295148 Sf3a1 Mouse trimellitic anhydride increases expression EXP 6480464 trimellitic anhydride results in increased expression of SF3A1 mRNA CTD PMID:19042947 Sf3a1 Mouse triphenyl phosphate affects expression ISO RGD:1322957 6480464 triphenyl phosphate affects the expression of SF3A1 mRNA CTD PMID:37042841 Sf3a1 Mouse triptonide increases expression EXP 6480464 triptonide results in increased expression of SF3A1 mRNA CTD PMID:33045310 Sf3a1 Mouse tungsten decreases expression EXP 6480464 Tungsten results in decreased expression of SF3A1 mRNA CTD PMID:30912803 Sf3a1 Mouse tunicamycin increases expression EXP 6480464 Tunicamycin results in increased expression of SF3A1 mRNA CTD PMID:17127020 Sf3a1 Mouse valproic acid affects expression ISO RGD:1322957 6480464 Valproic Acid affects the expression of SF3A1 mRNA CTD PMID:25979313 Sf3a1 Mouse vinclozolin increases expression ISO RGD:1311477 6480464 vinclozolin results in increased expression of SF3A1 mRNA CTD PMID:23034163 Sf3a1 Mouse Yessotoxin decreases expression ISO RGD:1322957 6480464 yessotoxin analog results in decreased expression of SF3A1 mRNA CTD PMID:30679557
Imported Annotations - KEGG (archival)
1,2-dimethylhydrazine (EXP) 17alpha-ethynylestradiol (EXP) 2,2',4,4'-Tetrabromodiphenyl ether (EXP) 2,3,7,8-tetrachlorodibenzodioxine (EXP) 2,4-dinitrotoluene (ISO) 2,6-dimethoxyphenol (ISO) 2,6-dinitrotoluene (ISO) 4,4'-diaminodiphenylmethane (EXP) 4,4'-sulfonyldiphenol (EXP,ISO) 4-amino-2,6-dinitrotoluene (ISO) 4-hydroxyphenyl retinamide (EXP) aconitine (ISO) actinomycin D (ISO) aflatoxin B1 (ISO) amitrole (ISO) arsane (ISO) arsenic atom (ISO) atrazine (ISO) benzo[a]pyrene (ISO) bis(2-ethylhexyl) phthalate (EXP) bisphenol A (EXP,ISO) bisphenol AF (ISO) Brodifacoum (ISO) butanal (ISO) cadmium atom (ISO) cadmium dichloride (ISO) caffeine (ISO) cannabidiol (ISO) cisplatin (ISO) coumarin (ISO) cyclosporin A (ISO) deoxynivalenol (ISO) diazinon (ISO) dicrotophos (ISO) disodium selenite (ISO) dorsomorphin (ISO) enzyme inhibitor (ISO) epoxiconazole (EXP) ethanol (EXP) folic acid (EXP) FR900359 (ISO) glyphosate (ISO) GSK-J4 (ISO) hydrogen peroxide (EXP) inulin (EXP) ivermectin (ISO) methimazole (ISO) methylmercury chloride (ISO) N-methyl-4-phenylpyridinium (EXP) nitrates (EXP) Nutlin-3 (ISO) paracetamol (EXP,ISO) perfluorohexanesulfonic acid (EXP) perfluorooctane-1-sulfonic acid (EXP) progesterone (EXP) resveratrol (EXP,ISO) SB 431542 (ISO) sodium arsenite (ISO) sodium chloride (ISO) testosterone (EXP) thioacetamide (ISO) thiram (ISO) titanium dioxide (EXP) trimellitic anhydride (EXP) triphenyl phosphate (ISO) triptonide (EXP) tungsten (EXP) tunicamycin (EXP) valproic acid (ISO) vinclozolin (ISO) Yessotoxin (ISO)
Cellular Component
catalytic step 2 spliceosome (IBA,IEA,ISO) nuclear speck (ISO,ISS) nucleoplasm (ISO) nucleus (ISO,ISS) spliceosomal complex (ISO) U2 snRNP (IBA,ISO,ISS) U2-type precatalytic spliceosome (ISO,ISS) U2-type prespliceosome (IBA,ISO,ISS) U2-type spliceosomal complex (ISO,ISS)
Sf3a1 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 11 4,110,354 - 4,132,541 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 11 4,110,350 - 4,132,541 (+) Ensembl GRCm39 Ensembl GRCm38 11 4,160,354 - 4,182,541 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 11 4,160,350 - 4,182,541 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 11 4,060,357 - 4,082,544 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 11 4,060,371 - 4,080,632 (+) NCBI MGSCv36 mm8 Celera 11 4,656,698 - 4,679,484 (+) NCBI Celera Cytogenetic Map 11 A1 NCBI cM Map 11 2.91 NCBI
SF3A1 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 22 30,331,988 - 30,356,894 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 22 30,331,988 - 30,356,919 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 22 30,727,977 - 30,752,883 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 22 29,057,977 - 29,082,913 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 22 29,052,532 - 29,077,467 NCBI Celera 22 14,527,665 - 14,552,601 (-) NCBI Celera Cytogenetic Map 22 q12.2 NCBI HuRef 22 13,689,762 - 13,714,601 (-) NCBI HuRef CHM1_1 22 30,687,097 - 30,712,033 (-) NCBI CHM1_1 T2T-CHM13v2.0 22 30,795,327 - 30,820,234 (-) NCBI T2T-CHM13v2.0
Sf3a1 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 14 83,254,971 - 83,275,720 (+) NCBI GRCr8 mRatBN7.2 14 79,031,394 - 79,052,144 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 14 79,031,394 - 79,052,144 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 14 83,472,045 - 83,492,783 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 14 84,712,124 - 84,732,862 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 14 81,158,029 - 81,178,761 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 14 84,393,182 - 84,413,931 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 14 84,393,182 - 84,413,931 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 14 85,074,847 - 85,095,596 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 14 84,786,072 - 84,806,825 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 14 84,805,230 - 84,823,748 (+) NCBI Celera 14 77,942,391 - 77,963,140 (+) NCBI Celera Cytogenetic Map 14 q21 NCBI
Sf3a1 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955455 4,577,329 - 4,602,141 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955455 4,579,153 - 4,601,942 (-) NCBI ChiLan1.0 ChiLan1.0
SF3A1 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 23 40,301,250 - 40,324,017 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 22 42,999,894 - 43,022,639 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 22 11,369,772 - 11,392,998 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 22 29,171,654 - 29,194,882 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 22 29,172,536 - 29,194,735 (-) Ensembl panpan1.1 panPan2
SF3A1 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 26 23,485,551 - 23,504,242 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 26 23,485,797 - 23,504,346 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 26 23,356,731 - 23,375,424 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 26 23,869,763 - 23,888,464 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 26 23,869,765 - 23,888,598 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 26 23,571,199 - 23,589,903 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 26 23,834,032 - 23,852,728 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 26 23,894,392 - 23,913,085 (-) NCBI UU_Cfam_GSD_1.0
Sf3a1
SF3A1 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 14 47,312,473 - 47,335,370 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 14 47,312,460 - 47,335,448 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 14 50,400,016 - 50,419,872 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
SF3A1 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 19 13,213,059 - 13,237,200 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 19 13,211,275 - 13,237,257 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666045 112,908,883 - 112,931,008 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Sf3a1
.
Predicted Target Of
Count of predictions: 1139 Count of miRNA genes: 624 Interacting mature miRNAs: 783 Transcripts: ENSMUST00000002198, ENSMUST00000129583, ENSMUST00000132666, ENSMUST00000133095 Prediction methods: Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction
1300599 Cocrb11_m cocaine related behavior 11 (mouse) Not determined 11 2670355 36671472 Mouse 26884446 Sklq10_m skull length QTL 10, 10 week (mouse) 11 3250000 62890826 Mouse 1300661 Lmr6_m leishmaniasis resistance 6 (mouse) Not determined 11 1 25976374 Mouse 13208559 Wght10_m weight 10 (mouse) 11 3950000 88890826 Mouse 13208558 Lgth12_m body length 12 (mouse) 11 3950000 94890826 Mouse 27095925 Pglq5_m pelvic girdle length QTL 5, 5 week (mouse) 11 3250000 19750000 Mouse 1357722 Vtbt11_m vertebral trabecular bone trait 11 (mouse) Not determined 11 1 23880487 Mouse 10044008 Hbnr15_m Heligmosomoides bakeri nematode resistance 15 (mouse) Not determined 11 227052 34227232 Mouse 27226798 Scvln18_m sacral vertebrae length 2, 16 week (mouse) 11 3250000 60690826 Mouse 27095919 Pglq10_m pelvic girdle length QTL 10, 10 week (mouse) 11 3250000 18450000 Mouse 1300768 Tshp9_m tooth shape 9 (mouse) Not determined 11 1 25976374 Mouse 1301765 Skull15_m skull morphology 15 (mouse) Not determined 11 1 25976374 Mouse 27095914 Pglq16_m pelvic girdle length QTL 16, 16 week (mouse) 11 3250000 18150000 Mouse 27095909 Scvln6_m sacral vertebrae length 2, 5 week (mouse) 11 3250000 44090827 Mouse 27095904 Scvln12_m sacral vertebrae length 2, 10 week (mouse) 11 3250000 34495048 Mouse 26884453 Sklq16_m skull length QTL 16, 16 week (mouse) 11 3250000 72690826 Mouse
AI159724
Mouse Assembly Chr Position (strand) Source JBrowse GRCm38 11 4,180,186 - 4,180,292 UniSTS GRCm38 GRCm38 8 86,145,992 - 86,146,099 UniSTS GRCm38 MGSCv37 11 4,080,189 - 4,080,295 UniSTS GRCm37 MGSCv37 8 88,669,891 - 88,669,998 UniSTS GRCm37 Celera 11 4,677,129 - 4,677,235 UniSTS Celera 8 90,431,057 - 90,431,164 UniSTS Cytogenetic Map 11 A1 UniSTS Cytogenetic Map 8 C3 UniSTS Whitehead/MRC_RH 11 11.87 UniSTS
Sf3a1
Mouse Assembly Chr Position (strand) Source JBrowse Cytogenetic Map 11 A1 UniSTS cM Map 11 UniSTS
UniSTS:236499
Mouse Assembly Chr Position (strand) Source JBrowse GRCm38 11 4,181,783 - 4,181,900 UniSTS GRCm38 MGSCv37 11 4,081,786 - 4,081,903 UniSTS GRCm37 Celera 11 4,678,726 - 4,678,843 UniSTS Cytogenetic Map 11 A1 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSMUST00000002198 ⟹ ENSMUSP00000002198
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 11 4,110,350 - 4,132,541 (+) Ensembl GRCm38.p6 Ensembl 11 4,160,350 - 4,182,541 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000129583
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 11 4,110,355 - 4,123,110 (+) Ensembl GRCm38.p6 Ensembl 11 4,160,355 - 4,173,110 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000132666
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 11 4,110,355 - 4,121,913 (+) Ensembl GRCm38.p6 Ensembl 11 4,160,355 - 4,171,913 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000133095
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 11 4,127,548 - 4,129,419 (+) Ensembl GRCm38.p6 Ensembl 11 4,177,548 - 4,179,419 (+) Ensembl
RefSeq Acc Id:
NM_026175 ⟹ NP_080451
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 11 4,110,354 - 4,132,541 (+) NCBI GRCm38 11 4,160,354 - 4,182,541 (+) ENTREZGENE MGSCv37 11 4,060,357 - 4,082,544 (+) RGD Celera 11 4,656,698 - 4,679,484 (+) RGD cM Map 11 ENTREZGENE
Sequence:
TGCTCCCGCGGCTTCTCTCTCTGGGTCGCCGCCATCTTGTCATTGAGTTGGATACTTCGTGTGGTGATCTTTAATCTTGTCGTCGCACCGGTTGTCGCCACCGAGGTGGACTGGCAGCCCTGAGCGTC
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RefSeq Acc Id:
NP_080451 ⟸ NM_026175
- UniProtKB:
Q8C175 (UniProtKB/Swiss-Prot), Q8C128 (UniProtKB/Swiss-Prot), Q8C0M7 (UniProtKB/Swiss-Prot), Q921T3 (UniProtKB/Swiss-Prot), Q8K4Z5 (UniProtKB/Swiss-Prot), Q3TVM1 (UniProtKB/TrEMBL)
- Sequence:
MQAGPVQAVPPPPPVATESKQPIEEEASSKEDPTPSKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQQQATQQQL
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Ensembl Acc Id:
ENSMUSP00000002198 ⟸ ENSMUST00000002198
RGD ID: 6820203 Promoter ID: MM_KWN:6218 Type: CpG-Island SO ACC ID: SO:0000170 Source: MPROMDB Tissues & Cell Lines: 3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day3, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen Transcripts: ENSMUST00000093381, ENSMUST00000101626, OTTMUST00000011260, OTTMUST00000011261, OTTMUST00000011262, OTTMUST00000011274, OTTMUST00000011275, OTTMUST00000011276, UC007HUN.1 Position: Mouse Assembly Chr Position (strand) Source MGSCv36 11 4,060,161 - 4,060,661 (-) MPROMDB
RGD ID: 8673780 Promoter ID: EPDNEW_M14921 Type: initiation region Name: Sf3a1_1 Description: Mus musculus splicing factor 3a, subunit 1 , mRNA. SO ACC ID: SO:0000170 Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ ) Experiment Methods: Single-end sequencing. Position: Mouse Assembly Chr Position (strand) Source GRCm38 11 4,160,368 - 4,160,428 EPDNEW
