LORICRIN (loricrin cornified envelope precursor protein) - Rat Genome Database

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Gene: LORICRIN (loricrin cornified envelope precursor protein) Chlorocebus sabaeus
Analyze
Symbol: LORICRIN
Name: loricrin cornified envelope precursor protein
RGD ID: 18757276
Description: ENCODES a protein that exhibits structural constituent of cytoskeleton (ortholog); INVOLVED IN keratinocyte differentiation (ortholog); peptide cross-linking (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN cornified envelope (ortholog); cytoplasmic side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOR
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,494,570 - 10,497,944 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660389,966,739 - 9,968,274 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LORICRIN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,494,570 - 10,497,944 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660389,966,739 - 9,968,274 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LORICRIN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,259,687 - 153,262,124 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,259,687 - 153,262,124 (+)EnsemblGRCh38hg38GRCh38
GRCh371153,232,163 - 153,234,600 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,498,803 - 151,501,224 (+)NCBINCBI36Build 36hg18NCBI36
Build 341150,046,475 - 150,047,671NCBI
Celera1126,303,436 - 126,305,857 (+)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1124,595,566 - 124,597,999 (+)NCBIHuRef
CHM1_11154,627,959 - 154,630,380 (+)NCBICHM1_1
T2T-CHM13v2.01152,396,903 - 152,399,352 (+)NCBIT2T-CHM13v2.0
Loricrin
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39391,987,578 - 91,990,447 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl391,987,578 - 91,990,449 (-)EnsemblGRCm39 Ensembl
GRCm38392,080,271 - 92,083,142 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl392,080,271 - 92,083,142 (-)EnsemblGRCm38mm10GRCm38
MGSCv37391,884,193 - 91,887,064 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36392,166,209 - 92,169,067 (-)NCBIMGSCv36mm8
Celera392,123,831 - 92,126,702 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map340.14NCBI
Loricrin
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82180,253,674 - 180,256,572 (-)NCBIGRCr8
mRatBN7.22177,558,062 - 177,560,960 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2177,558,252 - 177,559,807 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2185,120,471 - 185,123,369 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02183,102,235 - 183,105,133 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02177,763,534 - 177,766,432 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02191,984,455 - 191,990,713 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2191,984,773 - 191,986,170 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02212,877,186 - 212,882,693 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42184,953,538 - 184,955,283 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2172,680,893 - 172,687,160 (+)NCBICelera
Cytogenetic Map2q34NCBI
Loricrin
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955592167,139 - 169,638 (-)NCBIChiLan1.0ChiLan1.0
LORICRIN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2196,580,323 - 96,581,568 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1196,315,995 - 96,317,311 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,607,506 - 128,608,808 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
LORICRIN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11761,994,297 - 61,995,591 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1761,460,176 - 61,463,150 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01763,144,507 - 63,147,606 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11761,893,634 - 61,896,464 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01761,944,715 - 61,947,725 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01762,703,311 - 62,706,427 (+)NCBIUU_Cfam_GSD_1.0
LORICRIN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl496,304,070 - 96,305,110 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1496,303,835 - 96,308,016 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24105,206,034 - 105,209,187 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Loricrin
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624885675,955 - 677,391 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LORICRIN
101 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
53 13 17 20 20 50 10

Sequence


RefSeq Acc Id: XM_037997927   ⟹   XP_037853855
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660389,966,739 - 9,968,274 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037853855 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000017937.1
RefSeq Acc Id: XP_037853855   ⟸   XM_037997927
- UniProtKB: A0A0D9SAP8 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000054 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018481.1 UniProtKB/TrEMBL
InterPro Loricrin UniProtKB/TrEMBL
NCBI Gene LORICRIN ENTREZGENE
PANTHER LORICRIN UniProtKB/TrEMBL
  PTHR39228 UniProtKB/TrEMBL
Pfam Loricrin UniProtKB/TrEMBL
PRINTS EGGSHELL UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
UniProt A0A0D9SAP8 ENTREZGENE, UniProtKB/TrEMBL