REEP1 (receptor accessory protein 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: REEP1 (receptor accessory protein 1) Chlorocebus sabaeus
Analyze
Symbol: REEP1
Name: receptor accessory protein 1
RGD ID: 18746545
Description: ENCODES a protein that exhibits microtubule binding (inferred); olfactory receptor binding (inferred); INVOLVED IN protein insertion into membrane (ortholog); regulation of intracellular transport (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); autosomal dominant distal hereditary motor neuronopathy 12 (ortholog); autosomal dominant distal hereditary motor neuronopathy 5 (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: receptor expression-enhancing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11420,819,318 - 20,924,484 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1420,820,275 - 20,940,683 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604591,546,477 - 91,668,731 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
REEP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11420,819,318 - 20,924,484 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1420,820,275 - 20,940,683 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604591,546,477 - 91,668,731 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
REEP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38286,213,993 - 86,338,083 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl286,213,993 - 86,338,083 (-)EnsemblGRCh38hg38GRCh38
GRCh37286,441,116 - 86,565,206 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36286,294,633 - 86,418,288 (-)NCBINCBI36Build 36hg18NCBI36
Build 34286,352,779 - 86,476,435NCBI
Celera286,269,251 - 86,393,245 (-)NCBICelera
Cytogenetic Map2p11.2NCBI
HuRef286,338,580 - 86,462,643 (-)NCBIHuRef
CHM1_1286,370,561 - 86,495,314 (-)NCBICHM1_1
T2T-CHM13v2.0286,216,087 - 86,340,099 (-)NCBIT2T-CHM13v2.0
Reep1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39671,684,413 - 71,787,694 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl671,684,545 - 71,787,694 (+)EnsemblGRCm39 Ensembl
GRCm38671,707,429 - 71,810,710 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl671,707,561 - 71,810,710 (+)EnsemblGRCm38mm10GRCm38
MGSCv37671,657,854 - 71,760,696 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36671,637,369 - 71,740,211 (+)NCBIMGSCv36mm8
Celera673,791,587 - 73,894,394 (+)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.2NCBI
Reep1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84105,303,974 - 105,420,611 (+)NCBIGRCr8
mRatBN7.24103,746,004 - 103,862,347 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4103,745,633 - 103,862,338 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4109,126,200 - 109,242,259 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04104,901,318 - 105,017,375 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04103,516,012 - 103,632,244 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0499,618,622 - 99,735,329 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl499,618,622 - 99,735,319 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04164,396,429 - 164,513,470 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44104,982,925 - 105,099,852 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14105,227,462 - 105,342,336 (+)NCBI
Celera492,903,130 - 93,018,649 (+)NCBICelera
Cytogenetic Map4q32NCBI
Reep1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554241,369,490 - 1,425,605 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554241,369,490 - 1,425,611 (+)NCBIChiLan1.0ChiLan1.0
REEP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21240,044,484 - 40,168,054 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A40,047,245 - 40,170,815 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A86,268,147 - 86,391,520 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A87,814,041 - 87,881,687 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A87,814,047 - 87,936,984 (-)Ensemblpanpan1.1panPan2
REEP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11738,807,217 - 38,908,434 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1738,807,014 - 38,906,196 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1738,493,572 - 38,594,217 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01739,540,817 - 39,641,510 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1739,540,187 - 39,642,151 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11738,706,876 - 38,807,834 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01738,743,145 - 38,843,963 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01739,129,124 - 39,230,115 (+)NCBIUU_Cfam_GSD_1.0
Reep1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629279,614,597 - 79,696,048 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367121,206,276 - 1,241,301 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367121,186,565 - 1,241,829 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
REEP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl358,436,324 - 58,558,934 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1358,436,319 - 58,558,943 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2361,264,880 - 61,327,574 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Reep1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474916,933,576 - 17,043,753 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474916,933,575 - 17,042,017 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in REEP1
2535 total Variants

Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_038007211   ⟹   XP_037863139
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604591,546,477 - 91,668,722 (-)NCBI
RefSeq Acc Id: XM_038007212   ⟹   XP_037863140
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604591,546,477 - 91,668,731 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037863139 (Get FASTA)   NCBI Sequence Viewer  
  XP_037863140 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000012394.1
RefSeq Acc Id: XP_037863140   ⟸   XM_038007212
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037863139   ⟸   XM_038007211
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RUV5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000016327 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014420.1 UniProtKB/TrEMBL
InterPro TB2_DP1_HVA22 UniProtKB/TrEMBL
NCBI Gene REEP1 ENTREZGENE
PANTHER PTHR12300 UniProtKB/TrEMBL
  RECEPTOR EXPRESSION-ENHANCING PROTEIN 1 UniProtKB/TrEMBL
Pfam TB2_DP1_HVA22 UniProtKB/TrEMBL
UniProt A0A0D9RUV5 ENTREZGENE, UniProtKB/TrEMBL