PRXL2A (peroxiredoxin like 2A) - Rat Genome Database

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Gene: PRXL2A (peroxiredoxin like 2A) Chlorocebus sabaeus
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Symbol: PRXL2A
Name: peroxiredoxin like 2A
RGD ID: 18745464
Description: ENCODES a protein that exhibits antioxidant activity (inferred); INVOLVED IN regulation of osteoclast differentiation (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FAM213A; family with sequence similarity 213 member A; peroxiredoxin-like 2A; redox-regulatory protein FAM213A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1951,403,837 - 51,428,015 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl951,404,808 - 51,427,599 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604811,725,400 - 11,751,897 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
PRXL2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1951,403,837 - 51,428,015 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl951,404,808 - 51,427,599 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604811,725,400 - 11,751,897 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PRXL2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381080,407,829 - 80,437,115 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1080,407,829 - 80,437,115 (+)EnsemblGRCh38hg38GRCh38
GRCh371082,167,585 - 82,196,871 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361082,158,222 - 82,182,733 (+)NCBINCBI36Build 36hg18NCBI36
Build 341082,158,277 - 82,182,727NCBI
Celera1076,158,574 - 76,183,083 (+)NCBICelera
Cytogenetic Map10q23.1NCBI
HuRef1076,010,785 - 76,035,953 (+)NCBIHuRef
CHM1_11082,450,611 - 82,475,759 (+)NCBICHM1_1
T2T-CHM13v2.01081,276,927 - 81,306,214 (+)NCBIT2T-CHM13v2.0
Prxl2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391440,715,692 - 40,735,790 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1440,715,697 - 40,735,745 (-)EnsemblGRCm39 Ensembl
GRCm381440,993,735 - 41,013,833 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1440,993,740 - 41,013,788 (-)EnsemblGRCm38mm10GRCm38
MGSCv371441,807,029 - 41,827,064 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361439,902,453 - 39,922,488 (-)NCBIMGSCv36mm8
Celera1437,152,444 - 37,172,479 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1422.36NCBI
Prxl2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81616,900,697 - 16,920,521 (-)NCBIGRCr8
mRatBN7.21616,866,601 - 16,886,378 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1616,866,603 - 16,886,433 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1616,930,779 - 16,950,429 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01618,057,541 - 18,077,191 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01616,983,676 - 17,003,327 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01617,494,000 - 17,513,781 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1617,493,953 - 17,513,870 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01617,376,841 - 17,396,622 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41617,425,527 - 17,445,308 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11617,425,526 - 17,445,306 (-)NCBI
Celera1617,092,238 - 17,112,513 (-)NCBICelera
Cytogenetic Map16p14NCBI
Prxl2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955510400,469 - 423,056 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955510400,454 - 420,900 (+)NCBIChiLan1.0ChiLan1.0
PRXL2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2892,374,121 - 92,398,591 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11092,379,450 - 92,403,912 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01076,808,869 - 76,837,447 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11080,407,861 - 80,432,032 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1080,412,903 - 80,432,032 (+)Ensemblpanpan1.1panPan2
PRXL2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1429,539,182 - 29,559,353 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl429,538,781 - 29,558,961 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha429,664,527 - 29,684,707 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0429,842,305 - 29,862,483 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1429,711,907 - 29,732,079 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0429,914,243 - 29,934,411 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0430,268,661 - 30,288,845 (+)NCBIUU_Cfam_GSD_1.0
Prxl2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721351,144,036 - 51,163,838 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936716246,345 - 266,531 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936716246,735 - 266,513 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRXL2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1482,249,452 - 82,271,214 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11482,249,450 - 82,271,227 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21488,856,827 - 88,878,595 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Prxl2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248416,671,604 - 6,682,854 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248416,672,204 - 6,690,991 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 60
Low 20
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000007492   ⟹   ENSCSAP00000005671
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl951,404,808 - 51,427,599 (-)Ensembl
RefSeq Acc Id: XM_007962776   ⟹   XP_007960967
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1951,403,837 - 51,428,015 (-)NCBI
Vero_WHO_p1.0NW_02366604811,725,400 - 11,751,893 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007962778   ⟹   XP_007960969
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1951,403,919 - 51,427,656 (-)NCBI
Vero_WHO_p1.0NW_02366604811,725,400 - 11,751,897 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007960967 (Get FASTA)   NCBI Sequence Viewer  
  XP_007960969 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000005671
  ENSCSAP00000005671.1
RefSeq Acc Id: XP_007960967   ⟸   XM_007962776
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007960969   ⟸   XM_007962778
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCSAP00000005671   ⟸   ENSCSAT00000007492


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000009424 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000007492.1 UniProtKB/TrEMBL
InterPro PXL2A/B/C UniProtKB/TrEMBL
NCBI Gene PRXL2A ENTREZGENE
PANTHER PEROXIREDOXIN-LIKE 2A UniProtKB/TrEMBL
  PTHR28630 UniProtKB/TrEMBL
Pfam AhpC-TSA_2 UniProtKB/TrEMBL
UniProt A0A0D9RAN2_CHLSB UniProtKB/TrEMBL