DMRT3 (doublesex and mab-3 related transcription factor 3) - Rat Genome Database

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Gene: DMRT3 (doublesex and mab-3 related transcription factor 3) Chlorocebus sabaeus
Analyze
Symbol: DMRT3
Name: doublesex and mab-3 related transcription factor 3
RGD ID: 18736687
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN adult walking behavior (ortholog); male sex differentiation (ortholog); regulation of odontogenesis of dentin-containing tooth (ortholog); ASSOCIATED WITH chromosome 9p deletion syndrome (ortholog); primary ovarian insufficiency (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: doublesex- and mab-3-related transcription factor 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11278,528,709 - 78,543,509 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1278,529,443 - 78,543,419 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603866,909,248 - 66,924,674 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
DMRT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11278,528,709 - 78,543,509 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1278,529,443 - 78,543,419 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603866,909,248 - 66,924,674 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
DMRT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389976,655 - 991,732 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9976,655 - 991,732 (+)EnsemblGRCh38hg38GRCh38
GRCh379976,655 - 991,732 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369966,964 - 981,732 (+)NCBINCBI36Build 36hg18NCBI36
Build 349966,963 - 981,732NCBI
Celera9894,871 - 909,644 (+)NCBICelera
Cytogenetic Map9p24.3NCBI
HuRef9929,719 - 944,508 (+)NCBIHuRef
CHM1_19977,145 - 991,912 (+)NCBICHM1_1
T2T-CHM13v2.09977,925 - 992,996 (+)NCBIT2T-CHM13v2.0
Dmrt3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391925,587,609 - 25,601,285 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1925,587,665 - 25,601,285 (+)EnsemblGRCm39 Ensembl
GRCm381925,610,246 - 25,623,921 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1925,610,301 - 25,623,921 (+)EnsemblGRCm38mm10GRCm38
MGSCv371925,685,027 - 25,698,411 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361925,677,634 - 25,691,016 (+)NCBIMGSCv36mm8
Celera1926,405,156 - 26,418,520 (+)NCBICelera
Cytogenetic Map19BNCBI
cM Map1920.5NCBI
Dmrt3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,670,642 - 232,690,557 (+)NCBIGRCr8
mRatBN7.21223,244,340 - 223,264,254 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1223,248,747 - 223,262,530 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1231,696,334 - 231,710,133 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01238,626,427 - 238,640,213 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01231,447,200 - 231,460,981 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01243,589,607 - 243,602,926 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1243,589,607 - 243,602,926 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01250,848,350 - 250,861,669 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41229,044,302 - 229,058,689 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11229,206,114 - 229,222,715 (+)NCBI
Celera1220,451,183 - 220,464,645 (+)NCBICelera
Cytogenetic Map1q51NCBI
Dmrt3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554345,455,449 - 5,470,343 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554345,455,449 - 5,470,343 (+)NCBIChiLan1.0ChiLan1.0
DMRT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211123,588,955 - 123,607,298 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19123,594,898 - 123,613,241 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09786,402 - 801,114 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19980,586 - 994,885 (+)NCBIpanpan1.1PanPan1.1panPan2
DMRT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1189,798,215 - 89,813,140 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl189,798,100 - 89,812,328 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha190,265,734 - 90,280,606 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0190,346,567 - 90,361,456 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl190,346,567 - 90,360,657 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1189,994,340 - 90,009,257 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0189,704,994 - 89,719,915 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0190,474,207 - 90,489,149 (+)NCBIUU_Cfam_GSD_1.0
Dmrt3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947137,236,171 - 137,250,587 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365033,922,417 - 3,936,493 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365033,922,417 - 3,936,493 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DMRT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1220,820,556 - 220,834,034 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11220,819,525 - 220,834,080 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Dmrt3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247365,648,318 - 5,661,584 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247365,648,318 - 5,662,301 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
40 20 17 17 17 40 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007969396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000006686   ⟹   ENSCSAP00000004884
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1278,529,443 - 78,543,419 (-)Ensembl
RefSeq Acc Id: XM_007969396   ⟹   XP_007967587
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11278,528,709 - 78,543,509 (-)NCBI
Vero_WHO_p1.0NW_02366603866,909,248 - 66,924,674 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007967587 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004884
  ENSCSAP00000004884.1
RefSeq Acc Id: XP_007967587   ⟸   XM_007969396
- UniProtKB: A0A0D9R8E5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000004884   ⟸   ENSCSAT00000006686


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008627 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006686.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.1040.10 UniProtKB/TrEMBL
InterPro DM_DNA-bd UniProtKB/TrEMBL
  DM_DNA-bd_sf UniProtKB/TrEMBL
  DMA UniProtKB/TrEMBL
  DMRT/dsx/mab-3 UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/TrEMBL
KEGG Report csab:103219530 UniProtKB/TrEMBL
NCBI Gene DMRT3 ENTREZGENE
PANTHER DOUBLESEX- AND MAB-3-RELATED TRANSCRIPTION FACTOR 3 UniProtKB/TrEMBL
  PTHR12322 UniProtKB/TrEMBL
Pfam DMA UniProtKB/TrEMBL
  PF00751 UniProtKB/TrEMBL
PROSITE DM_1 UniProtKB/TrEMBL
  DM_2 UniProtKB/TrEMBL
SMART SM00301 UniProtKB/TrEMBL
Superfamily-SCOP SSF46934 UniProtKB/TrEMBL
  SSF82927 UniProtKB/TrEMBL
UniProt A0A0D9R8E5 ENTREZGENE, UniProtKB/TrEMBL