S100A7 (S100 calcium binding protein A7) - Rat Genome Database

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Gene: S100A7 (S100 calcium binding protein A7) Chlorocebus sabaeus
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Symbol: S100A7
Name: S100 calcium binding protein A7
RGD ID: 18735812
Description: ENCODES a protein that exhibits RAGE receptor binding (ortholog); zinc ion sequestering activity (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); positive regulation of ERK1 and ERK2 cascade (ortholog); positive regulation of granulocyte chemotaxis (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN endoplasmic reticulum (ortholog); extracellular region (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103223965
RGD Orthologs
Human
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,338,971 - 10,342,366 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660389,738,801 - 9,741,016 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
S100A7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,338,971 - 10,342,366 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660389,738,801 - 9,741,016 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
S100A7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,457,744 - 153,460,651 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,457,744 - 153,460,651 (-)EnsemblGRCh38hg38GRCh38
GRCh371153,430,220 - 153,433,127 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,696,844 - 151,699,761 (-)NCBINCBI36Build 36hg18NCBI36
Build 341150,243,293 - 150,246,210NCBI
Celera1126,501,473 - 126,504,390 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1124,793,599 - 124,796,516 (-)NCBIHuRef
CHM1_11154,826,042 - 154,828,959 (-)NCBICHM1_1
T2T-CHM13v2.01152,594,966 - 152,597,873 (-)NCBIT2T-CHM13v2.0
S100a7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624885790,961 - 794,189 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_037997552   ⟹   XP_037853480
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660389,738,801 - 9,741,016 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037853480 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000016181.1
RefSeq Acc Id: XP_037853480   ⟸   XM_037997552
- UniProtKB: A0A0D9S5P2 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000001849 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016679.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  S-100_dom UniProtKB/TrEMBL
  S100/CaBP7/8-like_CS UniProtKB/TrEMBL
  S100_Ca-bd_sub UniProtKB/TrEMBL
NCBI Gene LOC103223965 ENTREZGENE
PANTHER PROTEIN S100-A7A UniProtKB/TrEMBL
  S100 CALCIUM-BINDING PROTEIN UniProtKB/TrEMBL
Pfam S_100 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  S100_CABP UniProtKB/TrEMBL
SMART S_100 UniProtKB/TrEMBL
Superfamily-SCOP EF-hand UniProtKB/TrEMBL
UniProt A0A0D9S5P2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 S100A7  S100 calcium binding protein A7  LOC103223965  protein S100-A7  Symbol and/or name change 5135510 APPROVED