ZMYND10 (zinc finger MYND-type containing 10) - Rat Genome Database

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Gene: ZMYND10 (zinc finger MYND-type containing 10) Chlorocebus sabaeus
Analyze
Symbol: ZMYND10
Name: zinc finger MYND-type containing 10
RGD ID: 18716864
Description: ENCODES a protein that exhibits metal ion binding (inferred); molecular adaptor activity (inferred); protein folding chaperone (inferred); INVOLVED IN cilium movement (ortholog); inner dynein arm assembly (ortholog); motile cilium assembly (ortholog); ASSOCIATED WITH bronchiectasis (ortholog); Ciliary Motility Disorders (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN apical plasma membrane (inferred); centriolar satellite (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger MYND domain-containing protein 10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12211,728,792 - 11,734,252 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2211,728,795 - 11,733,726 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041155,252,749 - 155,258,007 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZMYND10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12211,728,792 - 11,734,252 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2211,728,795 - 11,733,726 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041155,252,749 - 155,258,007 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZMYND10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38350,341,112 - 50,345,732 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl350,341,110 - 50,345,732 (-)EnsemblGRCh38hg38GRCh38
GRCh37350,378,543 - 50,383,163 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36350,353,541 - 50,358,160 (-)NCBINCBI36Build 36hg18NCBI36
Build 34350,353,540 - 50,358,160NCBI
Celera350,351,371 - 50,355,987 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef350,434,168 - 50,438,757 (-)NCBIHuRef
CHM1_1350,330,797 - 50,335,412 (-)NCBICHM1_1
T2T-CHM13v2.0350,370,836 - 50,375,456 (-)NCBIT2T-CHM13v2.0
Zmynd10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,424,067 - 107,428,520 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9107,424,497 - 107,428,518 (+)EnsemblGRCm39 Ensembl
GRCm389107,546,872 - 107,551,321 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,547,298 - 107,551,319 (+)EnsemblGRCm38mm10GRCm38
MGSCv379107,449,641 - 107,453,650 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369107,405,411 - 107,409,420 (+)NCBIMGSCv36mm8
Celera9107,156,073 - 107,160,082 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map958.12NCBI
Zmynd10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,098,790 - 117,103,387 (+)NCBIGRCr8
mRatBN7.28108,220,386 - 108,224,745 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,220,386 - 108,224,744 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8113,847,422 - 113,851,783 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,046,578 - 112,050,939 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08109,889,359 - 109,893,720 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08116,302,513 - 116,306,871 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,302,513 - 116,306,870 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08115,658,773 - 115,663,131 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48112,794,227 - 112,798,585 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18112,813,681 - 112,818,039 (+)NCBI
Celera8107,526,809 - 107,531,167 (+)NCBICelera
Cytogenetic Map8q32NCBI
Zmynd10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555322,142,229 - 2,147,621 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555322,142,114 - 2,147,622 (-)NCBIChiLan1.0ChiLan1.0
ZMYND10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2250,321,133 - 50,327,941 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1350,325,908 - 50,332,716 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0350,267,218 - 50,273,009 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1351,502,548 - 51,508,288 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl351,502,548 - 51,508,288 (-)Ensemblpanpan1.1panPan2
ZMYND10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,009,838 - 39,014,357 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,010,225 - 39,014,356 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2038,931,326 - 38,935,571 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02039,366,320 - 39,370,565 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2039,366,283 - 39,370,547 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12038,734,153 - 38,738,397 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02039,137,715 - 39,141,960 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02039,417,724 - 39,421,969 (+)NCBIUU_Cfam_GSD_1.0
Zmynd10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560265,105,999 - 65,109,657 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365291,866,724 - 1,870,162 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365291,866,258 - 1,870,162 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZMYND10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,825,374 - 32,830,049 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,825,398 - 32,830,037 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21336,003,901 - 36,008,288 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Zmynd10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247304,190,633 - 4,194,963 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247304,190,706 - 4,195,003 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZMYND10
92 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000012293   ⟹   ENSCSAP00000010337
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2211,728,795 - 11,733,726 (-)Ensembl
RefSeq Acc Id: XM_007984340   ⟹   XP_007982531
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12211,728,792 - 11,734,251 (-)NCBI
Vero_WHO_p1.0NW_023666041155,252,749 - 155,258,007 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007984341   ⟹   XP_007982532
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12211,728,792 - 11,734,249 (-)NCBI
Vero_WHO_p1.0NW_023666041155,252,755 - 155,258,007 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007982531 (Get FASTA)   NCBI Sequence Viewer  
  XP_007982532 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000010337.1
RefSeq Acc Id: XP_007982531   ⟸   XM_007984340
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RNZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007982532   ⟸   XM_007984341
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RNZ8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000010337   ⟸   ENSCSAT00000012293


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014199 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012293.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.2220 UniProtKB/TrEMBL
InterPro UCP037948_Znf-MYND UniProtKB/TrEMBL
  ZMYND10 UniProtKB/TrEMBL
  Znf_MYND UniProtKB/TrEMBL
NCBI Gene ZMYND10 ENTREZGENE
PANTHER ZINC FINGER MYND DOMAIN CONTAINING PROTEIN 10 UniProtKB/TrEMBL
  ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 10 UniProtKB/TrEMBL
Pfam zf-MYND UniProtKB/TrEMBL
PIRSF UCP037948_Znf_MYND10 UniProtKB/TrEMBL
PROSITE ZF_MYND_1 UniProtKB/TrEMBL
  ZF_MYND_2 UniProtKB/TrEMBL
Superfamily-SCOP HIT/MYND zinc finger-like UniProtKB/TrEMBL
UniProt A0A0D9RNZ8 ENTREZGENE, UniProtKB/TrEMBL