ZNF280C (zinc finger protein 280C) - Rat Genome Database

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Gene: ZNF280C (zinc finger protein 280C) Chlorocebus sabaeus
Analyze
Symbol: ZNF280C
Name: zinc finger protein 280C
RGD ID: 18706624
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X105,456,212 - 105,528,981 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX105,475,491 - 105,528,991 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606542,882,304 - 42,948,816 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZNF280C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X105,456,212 - 105,528,981 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX105,475,491 - 105,528,991 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606542,882,304 - 42,948,816 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZNF280C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X130,202,707 - 130,268,899 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX130,202,707 - 130,268,899 (-)EnsemblGRCh38hg38GRCh38
GRCh37X129,336,681 - 129,402,873 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X129,164,366 - 129,230,554 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X129,062,223 - 129,128,408NCBI
CeleraX129,723,156 - 129,789,417 (-)NCBICelera
Cytogenetic MapXq26.1NCBI
HuRefX118,731,847 - 118,797,692 (-)NCBIHuRef
CHM1_1X129,248,321 - 129,314,582 (-)NCBICHM1_1
T2T-CHM13v2.0X128,521,512 - 128,587,700 (-)NCBIT2T-CHM13v2.0
Zfp280c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X47,630,503 - 47,683,599 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX47,630,502 - 47,683,381 (-)EnsemblGRCm39 Ensembl
GRCm38X48,541,626 - 48,594,648 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX48,541,625 - 48,594,504 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X45,894,803 - 45,947,629 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X44,786,253 - 44,836,760 (-)NCBIMGSCv36mm8
CeleraX36,043,250 - 36,094,608 (-)NCBICelera
Cytogenetic MapXA5NCBI
cM MapX25.68NCBI
Zfp280c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X132,594,279 - 132,685,548 (-)NCBIGRCr8
mRatBN7.2X127,716,403 - 127,807,600 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX127,717,983 - 127,779,825 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X135,371,696 - 135,434,204 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX135,370,822 - 135,419,704 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X135,443,271 - 135,501,361 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X134,938,016 - 134,995,705 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX126,664,883 - 126,755,748 (-)NCBICelera
Cytogenetic MapXq36NCBI
Znf280c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554734,783,413 - 4,855,065 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554734,783,540 - 4,854,872 (+)NCBIChiLan1.0ChiLan1.0
ZNF280C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X129,623,037 - 129,689,041 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X129,626,649 - 129,692,656 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X119,330,248 - 119,395,364 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X129,622,863 - 129,688,234 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX129,623,775 - 129,688,234 (-)Ensemblpanpan1.1panPan2
ZNF280C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X101,323,518 - 101,404,313 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX101,339,024 - 101,393,944 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX87,501,281 - 87,581,838 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X103,179,824 - 103,263,506 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX103,194,563 - 103,263,480 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X100,597,114 - 100,678,266 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X102,443,175 - 102,523,963 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X102,221,533 - 102,302,077 (-)NCBIUU_Cfam_GSD_1.0
Znf280c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X99,574,796 - 99,632,575 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364791,365,006 - 1,410,901 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364791,354,919 - 1,412,963 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF280C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX106,735,137 - 106,795,714 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X106,735,129 - 106,795,789 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X122,503,581 - 122,564,184 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Znf280c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247979,409,428 - 9,490,007 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247979,407,781 - 9,489,802 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 36 20 60
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000006042   ⟹   ENSCSAP00000004252
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 EnsemblX105,475,491 - 105,528,991 (-)Ensembl
RefSeq Acc Id: XM_007992678   ⟹   XP_007990869
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X105,456,212 - 105,528,949 (-)NCBI
Vero_WHO_p1.0NW_02366606542,882,304 - 42,948,816 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037989127   ⟹   XP_037845055
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606542,884,131 - 42,948,816 (-)NCBI
RefSeq Acc Id: XM_037989128   ⟹   XP_037845056
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606542,884,131 - 42,948,758 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007990869 (Get FASTA)   NCBI Sequence Viewer  
  XP_037845055 (Get FASTA)   NCBI Sequence Viewer  
  XP_037845056 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004252.1
Reference Protein Sequences
RefSeq Acc Id: XP_007990869   ⟸   XM_007992678
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R6L3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000004252   ⟸   ENSCSAT00000006042
RefSeq Acc Id: XP_037845055   ⟸   XM_037989127
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R6L3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037845056   ⟸   XM_037989128
- Peptide Label: isoform X3
- UniProtKB: A0A0D9R6L3 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007990 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006042.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro DUF4195 UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report csab:103232550 UniProtKB/TrEMBL
NCBI Gene ZNF280C ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 280C UniProtKB/TrEMBL
Pfam DUF4195 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A0D9R6L3 ENTREZGENE, UniProtKB/TrEMBL