LOC103227609 (E3 ubiquitin-protein ligase ARIH2) - Rat Genome Database

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Gene: LOC103227609 (E3 ubiquitin-protein ligase ARIH2) Chlorocebus sabaeus
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Symbol: LOC103227609 (Ensembl: ARIH2)
Name: E3 ubiquitin-protein ligase ARIH2 (Ensembl:ariadne RBR E3 ubiquitin protein ligase 2)
RGD ID: 18691336
Description: ENCODES a protein that exhibits metal ion binding (inferred); transferase activity (inferred); ubiquitin conjugating enzyme binding (inferred); INVOLVED IN ubiquitin-dependent protein catabolic process (ortholog); FOUND IN Cul5-RING ubiquitin ligase complex (inferred); cytoplasm (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ariadne RBR E3 ubiquitin protein ligase 2; ARIH2
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,319,039 - 10,398,244 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2210,328,154 - 10,385,184 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236666404,923 - 69,475 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007984168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007984176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037995897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037995898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037995899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037995900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037995901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037995903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_495206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000013385   ⟹   ENSCSAP00000011385
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2210,328,154 - 10,385,184 (+)Ensembl
RefSeq Acc Id: XM_037995897   ⟹   XP_037851825
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236666404,923 - 69,473 (+)NCBI
RefSeq Acc Id: XM_037995898   ⟹   XP_037851826
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236666404,923 - 69,475 (+)NCBI
RefSeq Acc Id: XM_037995899   ⟹   XP_037851827
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236666404,923 - 69,475 (+)NCBI
RefSeq Acc Id: XM_037995900   ⟹   XP_037851828
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236666404,936 - 69,475 (+)NCBI
RefSeq Acc Id: XM_037995901   ⟹   XP_037851829
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236666409,371 - 69,475 (+)NCBI
RefSeq Acc Id: XM_037995903   ⟹   XP_037851831
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236666409,372 - 69,475 (+)NCBI
Ensembl Acc Id: ENSCSAP00000011385   ⟸   ENSCSAT00000013385
RefSeq Acc Id: XP_037851826   ⟸   XM_037995898
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037851827   ⟸   XM_037995899
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037851825   ⟸   XM_037995897
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037851828   ⟸   XM_037995900
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037851829   ⟸   XM_037995901
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037851831   ⟸   XM_037995903
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000015355 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013385.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1750 UniProtKB/TrEMBL
  2.20.25.20 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro Ariadne UniProtKB/TrEMBL
  BRcat_RBR_TRIAD1 UniProtKB/TrEMBL
  E3_UB_ligase_RBR UniProtKB/TrEMBL
  IBR_dom UniProtKB/TrEMBL
  Rcat_RBR_TRIAD1 UniProtKB/TrEMBL
  TRIAD_supradom UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene ARIH2 ENTREZGENE
PANTHER PTHR11685 UniProtKB/TrEMBL
  PTHR11685:SF210 UniProtKB/TrEMBL
Pfam Ariadne UniProtKB/TrEMBL
  IBR UniProtKB/TrEMBL
  IBR_1 UniProtKB/TrEMBL
PROSITE TRIAD UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART IBR UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A0D9RRZ6_CHLSB UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103227609  E3 ubiquitin-protein ligase ARIH2  ARIH2  ariadne RBR E3 ubiquitin protein ligase 2  Symbol and/or name change 5135510 APPROVED