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Gene: JMJD4 (jumonji domain containing 4) Chlorocebus sabaeus

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Symbol:

JMJD4

Name:

jumonji domain containing 4

RGD ID:

18681014

Description:

ENCODES a protein that exhibits peptidyl-lysine 4-dioxygenase activity (ortholog); INVOLVED IN protein hydroxylation (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

2-oxoglutarate and iron-dependent oxygenase JMJD4; jmjC domain-containing protein 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	1,968,517 - 1,972,853 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	1,968,605 - 1,976,430 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	1,851,240 - 1,855,610 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

parathyroid carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of translational termination (IEA)

protein hydroxylation (ISO)

Cellular Component

cytoplasm (IEA)

nucleus (IEA)

Molecular Function

2-oxoglutarate-dependent dioxygenase activity (IEA)

peptidyl-lysine 4-dioxygenase activity (ISO)

protein binding (ISO)

sequence-specific DNA binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

JMJD4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	1,968,517 - 1,972,853 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	1,968,605 - 1,976,430 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	1,851,240 - 1,855,610 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JMJD4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	227,731,191 - 227,735,302 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	227,730,425 - 227,735,411 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	227,918,892 - 227,923,003 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	225,985,558 - 225,989,735 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	201,110,595 - 201,114,816 (-)	NCBI		Celera
Cytogenetic Map	1	q42.13	NCBI
HuRef	1	198,435,453 - 198,439,675 (-)	NCBI		HuRef
CHM1_1	1	229,191,305 - 229,195,527 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	226,920,125 - 226,924,236 (-)	NCBI		T2T-CHM13v2.0

Jmjd4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	59,340,871 - 59,353,797 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	59,340,871 - 59,349,393 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	59,450,032 - 59,462,971 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	59,450,045 - 59,458,567 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	59,263,590 - 59,271,570 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	59,986,188 - 59,994,168 (+)	NCBI		MGSCv36	mm8
MGSCv36	11	59,266,283 - 59,274,263 (+)	NCBI		MGSCv36	mm8
Cytogenetic Map	11	B1.3	NCBI
cM Map	11	37.71	NCBI

Jmjd4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	44,734,047 - 44,742,296 (+)	NCBI		GRCr8
mRatBN7.2	10	44,234,465 - 44,242,754 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	44,234,549 - 44,240,065 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	48,929,074 - 48,934,292 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	48,419,443 - 48,424,661 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	43,923,052 - 43,928,270 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	45,798,964 - 45,804,188 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	45,798,797 - 45,804,541 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	45,554,479 - 45,560,219 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	45,754,692 - 45,759,916 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	45,768,421 - 45,773,539 (+)	NCBI
Celera	10	43,496,405 - 43,501,629 (+)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

Jmjd4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955581	525,561 - 529,603 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955581	525,545 - 530,589 (+)	NCBI	ChiLan1.0	ChiLan1.0

JMJD4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	21,870,773 - 21,874,982 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	21,811,442 - 21,815,619 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	203,131,505 - 203,135,761 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	208,111,362 - 208,115,533 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	208,111,362 - 208,115,533 (-)	Ensembl	panpan1.1		panPan2

JMJD4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	1,100,002 - 1,109,965 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	1,105,283 - 1,109,960 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	746,647 - 751,771 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	827,871 - 832,995 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	827,938 - 832,985 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	1,036,614 - 1,041,713 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	799,112 - 804,212 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	787,771 - 792,883 (+)	NCBI		UU_Cfam_GSD_1.0

Jmjd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	88,036,323 - 88,042,836 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936864	377,565 - 383,027 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936864	377,576 - 384,112 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JMJD4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	50,804,799 - 50,812,184 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	50,804,797 - 50,812,180 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	54,412,692 - 54,420,077 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Jmjd4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624937	683,773 - 687,826 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624937	682,352 - 688,200 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in JMJD4
143 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007988218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007988219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037985473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037985474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037985475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037985476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037985477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037985478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037985479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000014514 ⟹ ENSCSAP00000012486

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	25	1,968,605 - 1,976,430 (+)	Ensembl

RefSeq Acc Id:

XM_007988218 ⟹ XP_007986409

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	25	1,968,517 - 1,972,853 (+)	NCBI
Vero_WHO_p1.0	NW_023666055	1,851,240 - 1,855,610 (+)	NCBI

Sequence:

show sequence

GAGAAGACCGCGGCGAGCCGCGCGCATGCGTGTAGGGCCGAAGCCCCAGGGGCTGCTCGGGCGG
AAACGCGGCGCTCTCAGTCTTCTGGTTTCGAGGCTGGTCCTTACCGTTTCCGCTCCGGCGGAAG
TGAGAGGGAGGGTCCTTCGACCAGTGCCGAGCTGGATGGACCGCGAGACGCTCCCCCTCGCTGA
CCGCCACTTCCGAGGCCTGGGGGGTGGTGTCCCCGGCGTCGGCCAGGCTCCGGGCCGGGTAGCC
TTCATCTCGGAGCCGGGCGCCTTCTCCTACGCCGACTTTGTGCGGGGCTTCCTCCTGCCCAACC
TGCCCTGCGTGTTCTCCAGCGCCTTCACGCAGGGCTGGGGCAGCCGGCGGCGCTGGGTGACGCC
CGCGGGGAGGCCCGACTTCGACTACCTGCTACGGACCTACGGAGACGTGGTTGTACCAGTTGCA
AACTGTGGGGTCCAAGAATACAACTCGAATCCCAAAGAGCACATGCCTCTCAGAGACTACATCA
CCTACTGGAAAGAGTACATCGAGGGGGGCTACTCCTCTCCCAGGGGCTGTCTCTACCTCAAAGA
CTGGCACCTGTGCAGGGACTTCCCGGTGGAGGACGTTTTCACCCTGCCTGTGTATTTCTCATCC
GACTGGCTGAATGAGTTCTGGGATGCACTGGATGTGGATGACTACCGCTTTGTCTACGCAGGGC
CTGCAGGCAGCTGGTCCCCTTTCCATGCTGACATCTTCCGCTCCTTCAGCTGGTCTGTCAATGT
CTGTGGGAGGAAGAAGTGGCTCCTCTTCCCCCCAGGGCAGGAAGAGGCCCTGCGGGACCGCCAT
GGCAACCTGCCCTATGACGTGACCTCCCCGGCACTCTGCGATACGCACCTGCACCCGCGGAGCC
AGCTTGCGGGCCCACCCTTGGAGATCACGCAGGAGGCGGGCGAGATGGTGTTTGTGCCCAGTGG
CTGGCACCACCAGGTGCACAACCTGGACGACACCATCTCCATCAACCACAACTGGGTCAATGGC
TTCAACCTGGCTAACATGTGGCGCTTCCTGCAGCAGGAGCTATGTGCCGTGCAGGAAGAGGTCA
GCGAGTGGAGGGACTCCATGCCCGACTGGCACCACCACTGCCAGGTCATCATGAGGTCCTGCTC
GGGCATCAACTTTGAAGAGTTTTACCACTTCCTCAAGGTCATCGCTGAGAAGAGGCTCCTGGTC
CTGAGGGAGGCGGCCGCTGAGGACGGTGCTGGGTTGGGCTTCGAACAGGCAGCCTTTGATGCTG
GGCGCATCACAGAGGTGCTGGCCTCCTTGGTTGCACACCCCAACTTCCAGAGAGTGGACACCAG
CGCGTTCTCACTGCGGCCCAAAGAGCTGCTGCAGCAGCTGAGGGAGGCTGTTGATGCCGCTGTG
GCCCCATAGCACCTGTCTTGAGGACAGAAGGACGGGTGGATGAGAAGTAGCCTCCTGCTCCAGG
GCCCTTCCAGAAATAAAGACTGCCCTCCCTGTGACCTGGGGCCCATCCCTGTCGAGGCTCGTGG
CCTGCCTGTCCATGGCCACTGCCTGGGTGCCTGTTTTCAGGTGAGGCCCAATGAGGTCAGGGAC
CCAAGAATGGATGTGGCCCTTCTGACCTGCAGCAGGCCTGCTGGGAGCTTGGAGATGGCGCCAT
GACCTGGCTCTTTTGGGGGGCCTGCCTCCTTAGGCCAGGATGCCTGAGCTGACAGGAGTCTGTG
TCTGATGTGCCTTCTCTGCAGGCTCCTCTCAGCCCGGTCCCCTCGTCTCAGGCCATTGGGCCAC
CCCTGGCTCTGCCCTGTGGGCTCAGGAAGAGGTTGGATCAGCACTGGGCAAGCTCACCAGGGCC
TCCAGGCAGAACTGGGTTGGCCTCTATCACCTCCAGGTGATGGGCTATGGAGCCAGTGGCCAGG
GCCTTCCTCTGGGTACCCAGAGGGGAGGGCTGGGCTGGGCTCTGCCACCTCCCTGCCTTTGCAG
TAGCCTTCGCAGGGCCTGTGGGCACCTGGAGAGGCCACGGGTGTGGGGGTGGAATCCCATCTGC
TGCTGAATCCTCACTTGGGCCTGAGGGGCTGTGCCTGCTGTGCACTCACAGCTGGGTCTTCGCA
AGGATGCTGTTCTCTGGAGTGGTGGGTCTCCAGCCCCTCTTCACACTGGGCATGATGGAGGTGT
GGGCGGACTCGTCCAGGCCGATCAAGGCACAGCAGTGAGCAGTGGAGGCCTGTTGTGGGGAATG
GACTCTCGTGGGATCCTCCTGCAGAGGATGCCCCAGGCCTGAACTCCCTAGTGGATCCACAGTT
TGTGGAGACTGGCACTCTGCCAGCCCTGTCCTTGACCCAGAGTGCAGTACTTTTTCAGTTGGCC
CCTGGTTGGCTGCCCCACCCCAGGAGGGGAGGAAGCATCTGAATCGGTAGGGATGGCATGCCAC
GGCTGTGTGCATTGCCTGCCCATGGCATCCACTGGGGCCGCTGGCACTTGTATAGGATGGAAGC
CCCTAAGAAGGGCCGGGGTTTCTGTCTGGTCTGTTCAATGAATCATGTGAAGTGCCTGCAAAAG
CAGCTTTAGGTGCTTCATATGTGTCTGTCCAATGAATGAGCTCCAGCCA

hide sequence

RefSeq Acc Id:

XM_007988219 ⟹ XP_007986410

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	25	1,968,517 - 1,972,287 (+)	NCBI
Vero_WHO_p1.0	NW_023666055	1,851,240 - 1,855,610 (+)	NCBI

Sequence:

show sequence

GAGAAGACCGCGGCGAGCCGCGCGCATGCGTGTAGGGCCGAAGCCCCAGGGGCTGCTCGGGCGG
AAACGCGGCGCTCTCAGTCTTCTGGTTTCGAGGCTGGTCCTTACCGTTTCCGCTCCGGCGGAAG
TGAGAGGGAGGGTCCTTCGACCAGTGCCGAGCTGGATGGACCGCGAGACGCTCCCCCTCGCTGA
CCGCCACTTCCGAGGCCTGGGGGGTGGTGTCCCCGGCGTCGGCCAGGCTCCGGGCCGGGTAGCC
TTCATCTCGGAGCCGGGCGCCTTCTCCTACGCCGACTTTGTGCGGGGCTTCCTCCTGCCCAACC
TGCCCTGCGTGTTCTCCAGCGCCTTCACGCAGGGCTGGGGCAGCCGGCGGCGCTGGGTGACGCC
CGCGGGGAGGCCCGACTTCGACTACCTGCTACGGACCTACGGAGACGTGGTTGTACCAGTTGCA
AACTGTGGGGTCCAAGAATACAACTCGAATCCCAAAGAGCACATGCCTCTCAGAGACTACATCA
CCTACTGGAAAGAGTACATCGAGGGGGGCTACTCCTCTCCCAGGGGCTGTCTCTACCTCAAAGA
CTGGCACCTGTGCAGGGACTTCCCGGTGGAGGACGTTTTCACCCTGCCTGTGTATTTCTCATCC
GACTGGCTGAATGAGTTCTGGGATGCACTGGATGTGGATGACTACCGCTTTGTCTACGCAGGGC
CTGCAGGCAGCTGGTCCCCTTTCCATGCTGACATCTTCCGCTCCTTCAGCTGGTCTGTCAATGT
CTGTGGGAGGAAGAAGTGGCTCCTCTTCCCCCCAGGGCAGGAAGAGGCCCTGCGGGACCGCCAT
GGCAACCTGCCCTATGACGTGACCTCCCCGGCACTCTGCGATACGCACCTGCACCCGCGGAGCC
AGCTTGCGGGCCCACCCTTGGAGATCACGCAGGAGGCGGGCGAGATGGTGTTTGTGCCCAGTGG
CTGGCACCACCAGGTGCACAACCTGGACGACACCATCTCCATCAACCACAACTGGGTCAATGGC
TTCAACCTGGCTAACATGTGGCGCTTCCTGCAGCAGGAGCTATGTGCCGTGCAGGAAGAGGTCA
TCATGAGGTCCTGCTCGGGCATCAACTTTGAAGAGTTTTACCACTTCCTCAAGGTCATCGCTGA
GAAGAGGCTCCTGGTCCTGAGGGAGGCGGCCGCTGAGGACGGTGCTGGGTTGGGCTTCGAACAG
GCAGCCTTTGATGCTGGGCGCATCACAGAGGTGCTGGCCTCCTTGGTTGCACACCCCAACTTCC
AGAGAGTGGACACCAGCGCGTTCTCACTGCGGCCCAAAGAGCTGCTGCAGCAGCTGAGGGAGGC
TGTTGATGCCGCTGTGGCCCCATAGCACCTGTCTTGAGGACAGAAGGACGGGTGGATGAGAAGT
AGCCTCCTGCTCCAGGGCCCTTCCAGAAATAAAGACTGCCCTCCCTGTGACCTGGGGCCCATCC
CTGTCGAGGCTCGTGGCCTGCCTGTCCATGGCCACTGCCTGGGTGCCTGTTTTCAGGTGAGGCC
CAATGAGGTCAGGGACCCAAGAATGGATGTGGCCCTTCTGACCTGCAGCAGGCCTGCTGGGAGC
TTGGAGATGGCGCCATGACCTGGCTCTTTTGGGGGGCCTGCCTCCTTAGGCCAGGATGCCTGAG
CTGACAGGAGTCTGTGTCTGATGTGCCTTCTCTGCAGGCTCCTCTCAGCCCGGTCCCCTCGTCT
CAGGCCATTGGGCCACCCCTGGCTCTGCCCTGTGGGCTCAGGAAGAGGTTGGATCAGCACTGGG
CAAGCTCACCAGGGCCTCCAGGCAGAACTGGGTTGGCCTCTATCACCTCCAGGTGATGGGCTAT
GGAGCCAGTGGCCAGGGCCTTCCTCTGGGTACCCAGAGGGGAGGGCTGGGCTGGGCTCTGCCAC
CTCCCTGCCTTTGCAGTAGCCTTCGCAGGGCCTGTGGGCACCTGGAGAGGCCACGGGTGTGGGG
GTGGAATCCCA

hide sequence

RefSeq Acc Id:

XM_037985473 ⟹ XP_037841401

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666055	1,851,240 - 1,855,610 (+)	NCBI

RefSeq Acc Id:

XM_037985474 ⟹ XP_037841402

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666055	1,851,240 - 1,855,610 (+)	NCBI

RefSeq Acc Id:

XM_037985475 ⟹ XP_037841403

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666055	1,851,240 - 1,855,610 (+)	NCBI

RefSeq Acc Id:

XM_037985476 ⟹ XP_037841404

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666055	1,851,240 - 1,855,610 (+)	NCBI

RefSeq Acc Id:

XM_037985477 ⟹ XP_037841405

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666055	1,851,240 - 1,855,610 (+)	NCBI

RefSeq Acc Id:

XM_037985478 ⟹ XP_037841406

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666055	1,851,240 - 1,855,610 (+)	NCBI

RefSeq Acc Id:

XM_037985479 ⟹ XP_037841407

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666055	1,851,240 - 1,855,610 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_007986409	(Get FASTA)	NCBI Sequence Viewer
	XP_007986410	(Get FASTA)	NCBI Sequence Viewer
	XP_037841401	(Get FASTA)	NCBI Sequence Viewer
	XP_037841402	(Get FASTA)	NCBI Sequence Viewer
	XP_037841403	(Get FASTA)	NCBI Sequence Viewer
	XP_037841404	(Get FASTA)	NCBI Sequence Viewer
	XP_037841405	(Get FASTA)	NCBI Sequence Viewer
	XP_037841406	(Get FASTA)	NCBI Sequence Viewer
	XP_037841407	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000012486.1

RefSeq Acc Id:	XP_007986409 ⟸ XM_007988218
- Peptide Label:	isoform X5
- UniProtKB:	A0A0D9RV47 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007986410 ⟸ XM_007988219
- Peptide Label:	isoform X6
- UniProtKB:	A0A0D9RV47 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000012486 ⟸ ENSCSAT00000014514

RefSeq Acc Id:	XP_037841401 ⟸ XM_037985473
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9RV47 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037841407 ⟸ XM_037985479
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_037841404 ⟸ XM_037985476
- Peptide Label:	isoform X4
- UniProtKB:	A0A0D9RV47 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037841406 ⟸ XM_037985478
- Peptide Label:	isoform X8
- UniProtKB:	A0A0D9RV47 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037841402 ⟸ XM_037985474
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9RV47 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037841405 ⟸ XM_037985477
- Peptide Label:	isoform X7
- UniProtKB:	A0A0D9RV47 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037841403 ⟸ XM_037985475
- Peptide Label:	isoform X3
- UniProtKB:	A0A0D9RV47 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000016420	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000014514.1	UniProtKB/TrEMBL
Gene3D-CATH	Cupin	UniProtKB/TrEMBL
InterPro	Cupin_8	UniProtKB/TrEMBL
	JmjC_dom	UniProtKB/TrEMBL
	JMJD6_ArgDemeth/LysHydrox	UniProtKB/TrEMBL
NCBI Gene	JMJD4	ENTREZGENE
PANTHER	2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4	UniProtKB/TrEMBL
	ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD	UniProtKB/TrEMBL
Pfam	Cupin_8	UniProtKB/TrEMBL
PROSITE	JMJC	UniProtKB/TrEMBL
SMART	JmjC	UniProtKB/TrEMBL
Superfamily-SCOP	Clavaminate synthase-like	UniProtKB/TrEMBL
UniProt	A0A0D9RV47	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar