FAM83E (family with sequence similarity 83 member E) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: FAM83E (family with sequence similarity 83 member E) Chlorocebus sabaeus
Analyze
Symbol: FAM83E
Name: family with sequence similarity 83 member E
RGD ID: 18678222
Description: ENCODES a protein that exhibits protein kinase binding (inferred); INVOLVED IN signal transduction (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein FAM83E
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1641,853,953 - 41,874,212 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl641,854,253 - 41,872,125 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607321,719,949 - 21,734,768 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
FAM83E
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1641,853,953 - 41,874,212 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl641,854,253 - 41,872,125 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607321,719,949 - 21,734,768 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FAM83E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381948,599,961 - 48,615,076 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1948,599,961 - 48,615,076 (-)EnsemblGRCh38hg38GRCh38
GRCh371949,103,218 - 49,118,333 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361953,795,669 - 53,808,506 (-)NCBINCBI36Build 36hg18NCBI36
Celera1945,968,730 - 45,981,559 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1945,482,899 - 45,495,884 (-)NCBIHuRef
CHM1_11949,105,776 - 49,118,569 (-)NCBICHM1_1
T2T-CHM13v2.01951,594,097 - 51,609,712 (-)NCBIT2T-CHM13v2.0
Fam83e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39745,370,595 - 45,379,179 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl745,370,636 - 45,378,916 (+)EnsemblGRCm39 Ensembl
GRCm38745,721,171 - 45,729,755 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,721,212 - 45,729,492 (+)EnsemblGRCm38mm10GRCm38
MGSCv37752,976,590 - 52,984,862 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36745,589,262 - 45,592,901 (+)NCBIMGSCv36mm8
Celera741,183,761 - 41,192,041 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.46NCBI
Fam83e
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81105,328,297 - 105,337,641 (+)NCBIGRCr8
mRatBN7.2196,191,581 - 96,201,182 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl196,191,742 - 96,201,192 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01101,703,627 - 101,712,238 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,704,746 - 101,711,379 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,782,714 - 102,790,993 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4196,190,389 - 96,197,390 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1196,268,499 - 96,275,501 (+)NCBI
Celera190,444,727 - 90,453,338 (+)NCBICelera
Cytogenetic Map1q22NCBI
Fam83e
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,933,911 - 1,942,286 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,933,345 - 1,942,707 (+)NCBIChiLan1.0ChiLan1.0
FAM83E
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22054,704,774 - 54,719,197 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11956,632,393 - 56,645,584 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01945,602,210 - 45,615,518 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11954,200,841 - 54,207,709 (-)NCBIpanpan1.1PanPan1.1panPan2
FAM83E
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,694,963 - 107,705,303 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,696,416 - 107,705,310 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1107,216,404 - 107,226,730 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01108,218,985 - 108,229,306 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1108,220,587 - 108,229,313 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,885,505 - 107,895,827 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01107,532,795 - 107,543,122 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01108,368,510 - 108,378,834 (+)NCBIUU_Cfam_GSD_1.0
Fam83e
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,037,527 - 21,046,430 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366642,656,043 - 2,663,372 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366642,656,043 - 2,663,372 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM83E
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl653,963,859 - 53,974,010 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1653,963,543 - 53,974,207 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,711,173 - 49,721,340 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Fam83e
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248325,259,058 - 5,267,239 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248325,257,934 - 5,267,760 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
56 22 19 21 21 54 20

Sequence


Ensembl Acc Id: ENSCSAT00000000854   ⟹   ENSCSAP00000015210
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl641,854,253 - 41,872,125 (-)Ensembl
RefSeq Acc Id: XM_007997443   ⟹   XP_007995634
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1641,853,953 - 41,874,212 (-)NCBI
Vero_WHO_p1.0NW_02366607321,719,949 - 21,734,768 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007995634 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015210.1
RefSeq Acc Id: XP_007995634   ⟸   XM_007997443
- UniProtKB: A0A0D9S2X1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000015210   ⟸   ENSCSAT00000000854


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000002834 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000854.1 UniProtKB/TrEMBL
Gene3D-CATH Endonuclease Chain A UniProtKB/TrEMBL
InterPro FAM83 UniProtKB/TrEMBL
  FAM83_N UniProtKB/TrEMBL
KEGG Report csab:103234985 UniProtKB/TrEMBL
NCBI Gene FAM83E ENTREZGENE
PANTHER PROTEIN FAM83B-RELATED UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam FAM83 UniProtKB/TrEMBL
Superfamily-SCOP Phospholipase D/nuclease UniProtKB/TrEMBL
UniProt A0A0D9S2X1 ENTREZGENE, UniProtKB/TrEMBL