Advanced Search (OLGA)

Gene: CDK5RAP3 (CDK5 regulatory subunit associated protein 3) Chlorocebus sabaeus

Analyze

Symbol:

CDK5RAP3

Name:

CDK5 regulatory subunit associated protein 3

RGD ID:

18672660

Description:

ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN negative regulation of cyclin-dependent protein serine/threonine kinase activity (ortholog); negative regulation of MAP kinase activity (ortholog); negative regulation of NF-kappaB transcription factor activity (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); nucleolus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

CDK5 regulatory subunit-associated protein 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	68,367,591 - 68,382,000 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	68,370,483 - 68,382,022 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	39,422,747 - 39,434,303 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

hereditary breast ovarian cancer syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic nuclear changes (IEA)

cell population proliferation (IEA)

definitive erythrocyte differentiation (IEA)

endoplasmic reticulum unfolded protein response (IEA)

liver development (IEA)

mitotic G2 DNA damage checkpoint signaling (IEA)

mitotic G2/M transition checkpoint (IEA)

negative regulation of cyclin-dependent protein serine/threonine kinase activity (ISO)

negative regulation of MAP kinase activity (ISO)

negative regulation of NF-kappaB transcription factor activity (ISO)

negative regulation of protein catabolic process (IEA)

negative regulation of protein kinase activity by regulation of protein phosphorylation (ISO)

negative regulation of protein phosphorylation (ISO)

negative regulation of protein serine/threonine kinase activity (ISO)

positive regulation of protein localization to nucleus (IEA)

positive regulation of protein ubiquitination (IEA)

positive regulation of reticulophagy (IEA)

positive regulation of signal transduction by p53 class mediator (IEA)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

positive regulation of ubiquitin-dependent protein catabolic process (ISO)

protein ufmylation (IEA,ISO)

regulation of cyclin-dependent protein serine/threonine kinase activity (ISO)

regulation of mitotic cell cycle (IEA)

regulation of phosphatase activity (ISO)

rescue of stalled ribosome (IEA)

response to endoplasmic reticulum stress (IEA)

ribosome disassembly (IEA)

Cellular Component

centrosome (IEA)

cytoplasm (IEA)

cytosol (IEA)

endomembrane system (IEA)

endoplasmic reticulum membrane (IEA,ISO)

intracellular membrane-bounded organelle (IEA)

microtubule (IEA)

nucleolus (IEA,ISO)

nucleus (IEA)

protein-containing complex (IEA)

Molecular Function

cyclin binding (IEA)

MDM2/MDM4 family protein binding (IEA)

mitogen-activated protein kinase binding (IEA)

NF-kappaB binding (IEA)

protein binding (ISO)

protein kinase binding (IEA)

protein-containing complex binding (ISO)

ubiquitin-like ligase-substrate adaptor activity (IEA)

ubiquitin-like protein ligase binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

CDK5RAP3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	68,367,591 - 68,382,000 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	68,370,483 - 68,382,022 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	39,422,747 - 39,434,303 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CDK5RAP3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	47,967,904 - 47,981,781 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	47,967,810 - 47,981,781 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	46,047,894 - 46,059,147 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	43,403,428 - 43,414,146 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	43,403,427 - 43,414,146	NCBI
Celera	17	42,501,248 - 42,511,966 (+)	NCBI		Celera
Cytogenetic Map	17	q21.32	NCBI
HuRef	17	41,416,597 - 41,427,853 (+)	NCBI		HuRef
CHM1_1	17	46,112,862 - 46,124,122 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	48,829,702 - 48,843,580 (+)	NCBI		T2T-CHM13v2.0

Cdk5rap3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	96,798,251 - 96,807,359 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	96,798,252 - 96,807,322 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	96,907,425 - 96,916,531 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	96,907,426 - 96,916,496 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	96,769,100 - 96,777,795 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	96,723,876 - 96,732,571 (-)	NCBI		MGSCv36	mm8
Celera	11	106,553,602 - 106,563,974 (-)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	60.16	NCBI

Cdk5rap3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	82,390,845 - 82,402,814 (-)	NCBI		GRCr8
mRatBN7.2	10	81,894,393 - 81,903,581 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	81,894,393 - 81,903,590 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	86,842,458 - 86,851,612 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	86,340,506 - 86,349,660 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	81,733,108 - 81,742,263 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	84,780,644 - 84,789,800 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	84,780,608 - 84,789,832 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	84,571,933 - 84,581,074 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	10	80,656,149 - 80,665,286 (-)	NCBI		Celera
Cytogenetic Map	10	q31	NCBI

Cdk5rap3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	13,120,761 - 13,170,073 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	13,160,811 - 13,170,012 (-)	NCBI	ChiLan1.0	ChiLan1.0

CDK5RAP3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	17,122,187 - 17,134,982 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	19,087,819 - 19,098,641 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	9,556,313 - 9,567,099 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	9,738,144 - 9,748,989 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	9,738,141 - 9,749,302 (-)	Ensembl	panpan1.1		panPan2

CDK5RAP3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	24,276,660 - 24,286,273 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	24,276,768 - 24,286,272 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	23,742,863 - 23,752,452 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	25,070,151 - 25,079,744 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	25,070,173 - 25,079,745 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	23,840,058 - 23,849,636 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	24,101,046 - 24,110,629 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	24,227,612 - 24,237,208 (+)	NCBI		UU_Cfam_GSD_1.0

Cdk5rap3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	23,719,423 - 23,729,698 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	13,345,443 - 13,355,841 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	13,345,443 - 13,355,841 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDK5RAP3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	24,224,263 - 24,234,467 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	24,224,262 - 24,234,468 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	24,044,526 - 24,053,777 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Cdk5rap3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	4,594,207 - 4,602,583 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624795	4,594,131 - 4,602,435 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CDK5RAP3
315 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008012975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008012976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008012977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008012978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037993238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037993239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037993240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000000581 ⟹ ENSCSAP00000015482

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	16	68,370,483 - 68,382,022 (+)	Ensembl

RefSeq Acc Id:

XM_008012975 ⟹ XP_008011166

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	16	68,370,832 - 68,382,000 (+)	NCBI
Vero_WHO_p1.0	NW_023666077	39,423,081 - 39,434,303 (+)	NCBI

Sequence:

show sequence

AGCCTTGGGGTGGGCGGGGCTGGAGGCCTGAGTGGAGCGTATACCCTGATTGGCTGTACGGAAG
GCGGCGACGTGGCCGAAGGAAGCCCGTTTGTGTCTAAACTGAAGCTCGGCCATAACGCCACTGG
ATTGGTGGGGGGGGGGGCGGGCCAGACTTCGGCCTGAAGCGGAAGTGGAGGAAAGATGGAGGAC
CATCAGCACGTGCCCATCGACATCCAGACCAGCAAGCTGCTCGATTGGCTGGTGGACAGAAGGC
ACTGCAGCCTGAAATGGCAGAGTCTGGTGCTGATGATCCGAGAGAAGATCAATGCTGCCATCCA
GGACATGCCAGAGAGCGAAGAGATCGCCCAGCTGCTGTCTGGGTCCTACATTCACTACTTTCAC
TGCCTAAAAATCGTGGACCTTCTCAAAGGCACAGAGGCCTCCACGAAAAATATTTTTGGCCGAT
ACTCTTCACAGCGGATGAAGGATTGGCAGGAGATTATAGCCCTGTATGAGAAGGACAACACCTA
CTTAGTGGAACTCTCTAGCCTCCTGGTTCGGAATGTCAACTATGAGATCCCGTCACTGAAGAAG
CAGATTGCCAAGTGCCAGCAGCTGCAGCAAGAATACAGCCGCAAGGAGGAGGAGTGCCAGGCAG
GGGCTGCTGAGATGCGGGAGCAGTTCTACCACTCCTGCAAGCAGTATGGCATCACGGGCGAAAA
TGTCCGAGGAGAACTGCTGGCCCTGGTGAAGGACCTGCCGAGTCAGCTGGCTGAGATTGGGGCA
GCGGCTCAGCAGTCCCTGGGGGAAGCCATCGACGTGTACCAGGCCTCTGTGGGGTTTGTGTGTG
ACAGCCCCACAGAGGAGGTGTTGCCAATGCTGCGGTTCGTGCAGAAGCGGGGAAACTCAACGGT
GTATGAGTGGAGGACGGGGACAGAGCCCTCTGTGGTGGAGCGACCCCACCTCGAGGAACTTCCT
GAGCAGATAGCAGAGGACGCGATTGACTGGGGCGACTTTGGGGTAGAGGCAGTGTCTGAGGGGA
CTGACTCTGGCATCTCTGCCGAGGCTGCTGGAATTGACTGGGGCGTCTTCCTGGAATCAGATTC
AAAGGACCCTGGAGGTGATGGGATAGACTGGGGTGACGATGCTGTTGCTTTGCAGATCACAGTG
CTGGAAGCAGGAACCCAGGCTCCAGAAGGTGTTGCCAGGGGCCCAGATGCTCTGACACTTCTTG
AGTACACTGAGACCCGGAATCAGTTCCTTGATGAGCTCATGGAGCTTGAGATCTTCTTAGCCCA
GAGAGCAGTGGAGTTGAGTGAGGAGGCAGACGTCCTGTCTGTGAGCCAGTTCCAGCTGGCTCCG
GCCATCCTGCAGGGCCAGACCAAAGAGAAGATGGTTACCATGGTGTCAGTGCTGGATAATCTGA
TAGGCAAGCTCACCAATCTTCAGCTGCAACACCTGTTTATGATCCTGGCCTCACCAAGGTATGT
GGACCGAGTGACTGAATTTCTCCAGCAAAAGCTGAAGCAGTCCCAGCTGCTGGCTTTGAAGAAA
GAGCTGATGGTGCAGAAGCAGCAGGAGGCACTTGGGGAGCAGGCGGCTCTGGAGCCTAAGCTGG
ACCTGCTGCTGGAGAAGAGCAAGGAGCTGCAGAAGCTGATTGAAGCTGACATCTCCAAGAGGTA
CAGCGGGCGCCCTGTGAACCTAATGGGAACCTCTCTGTGACACCTTCTTTGTTCTTGCCTGCCC
ATCTTCTCAGCCTTTGGGCTGAAGATGATAGCCAGGGCTGATGTTTTGAGGCCCTTCAAGGCAA
ACGATCAGGCCCACTGGAAGATGGAAAGCCACAGGAAGGAAGCGGTACCTGATGGTGATCTTGG
CATTCTTCATGTTCTCTACAAGAAGCTGTGGTGATTGGCCCTGTGGCCTGTCAGGCAAAAACCA
CAGCTTCTCCTTCTAGTTAGTATAGCAGACTTAATAAAAGAGGAAAAAAAACTCTT

hide sequence

RefSeq Acc Id:

XM_008012976 ⟹ XP_008011167

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	16	68,371,251 - 68,381,973 (+)	NCBI
Vero_WHO_p1.0	NW_023666077	39,423,481 - 39,434,302 (+)	NCBI

Sequence:

show sequence

GACATCCAGACCAGCAAGCTGCTCGGAGGAAGAGAGACCTAAGACCCAGTTGGAAATGAAGACC
TTTTAGTGTCCAGGCCATCTCCAGATTGGCTGGTGGACAGAAGGCACTGCAGCCTGAAATGGCA
GAGTCTGGTGCTGATGATCCGAGAGAAGATCAATGCTGCCATCCAGGACATGCCAGAGAGCGAA
GAGATCGCCCAGCTGCTGTCTGGGTCCTACATTCACTACTTTCACTGCCTAAAAATCGTGGACC
TTCTCAAAGGCACAGAGGCCTCCACGAAAAATATTTTTGGCCGATACTCTTCACAGCGGATGAA
GGATTGGCAGGAGATTATAGCCCTGTATGAGAAGGACAACACCTACTTAGTGGAACTCTCTAGC
CTCCTGGTTCGGAATGTCAACTATGAGATCCCGTCACTGAAGAAGCAGATTGCCAAGTGCCAGC
AGCTGCAGCAAGAATACAGCCGCAAGGAGGAGGAGTGCCAGGCAGGGGCTGCTGAGATGCGGGA
GCAGTTCTACCACTCCTGCAAGCAGTATGGCATCACGGGCGAAAATGTCCGAGGAGAACTGCTG
GCCCTGGTGAAGGACCTGCCGAGTCAGCTGGCTGAGATTGGGGCAGCGGCTCAGCAGTCCCTGG
GGGAAGCCATCGACGTGTACCAGGCCTCTGTGGGGTTTGTGTGTGACAGCCCCACAGAGGAGGT
GTTGCCAATGCTGCGGTTCGTGCAGAAGCGGGGAAACTCAACGGTGTATGAGTGGAGGACGGGG
ACAGAGCCCTCTGTGGTGGAGCGACCCCACCTCGAGGAACTTCCTGAGCAGATAGCAGAGGACG
CGATTGACTGGGGCGACTTTGGGGTAGAGGCAGTGTCTGAGGGGACTGACTCTGGCATCTCTGC
CGAGGCTGCTGGAATTGACTGGGGCGTCTTCCTGGAATCAGATTCAAAGGACCCTGGAGGTGAT
GGGATAGACTGGGGTGACGATGCTGTTGCTTTGCAGATCACAGTGCTGGAAGCAGGAACCCAGG
CTCCAGAAGGTGTTGCCAGGGGCCCAGATGCTCTGACACTTCTTGAGTACACTGAGACCCGGAA
TCAGTTCCTTGATGAGCTCATGGAGCTTGAGATCTTCTTAGCCCAGAGAGCAGTGGAGTTGAGT
GAGGAGGCAGACGTCCTGTCTGTGAGCCAGTTCCAGCTGGCTCCGGCCATCCTGCAGGGCCAGA
CCAAAGAGAAGATGGTTACCATGGTGTCAGTGCTGGATAATCTGATAGGCAAGCTCACCAATCT
TCAGCTGCAACACCTGTTTATGATCCTGGCCTCACCAAGGTATGTGGACCGAGTGACTGAATTT
CTCCAGCAAAAGCTGAAGCAGTCCCAGCTGCTGGCTTTGAAGAAAGAGCTGATGGTGCAGAAGC
AGCAGGAGGCACTTGGGGAGCAGGCGGCTCTGGAGCCTAAGCTGGACCTGCTGCTGGAGAAGAG
CAAGGAGCTGCAGAAGCTGATTGAAGCTGACATCTCCAAGAGGTACAGCGGGCGCCCTGTGAAC
CTAATGGGAACCTCTCTGTGACACCTTCTTTGTTCTTGCCTGCCCATCTTCTCAGCCTTTGGGC
TGAAGATGATAGCCAGGGCTGATGTTTTGAGGCCCTTCAAGGCAAACGATCAGGCCCACTGGAA
GATGGAAAGCCACAGGAAGGAAGCGGTACCTGATGGTGATCTTGGCATTCTTCATGTTCTCTAC
AAGAAGCTGTGGTGATTGGCCCTGTGGCCTGTCAGGCAAAAACCACAGCTTCTCCTTCTAGTTA
GTATAGCAGA

hide sequence

RefSeq Acc Id:

XM_008012978 ⟹ XP_008011169

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	16	68,367,591 - 68,382,000 (+)	NCBI
Vero_WHO_p1.0	NW_023666077	39,422,747 - 39,434,302 (+)	NCBI

Sequence:

show sequence

ATGCCCTGGATGCCAGACCAATTATGTGCTTATCTGCCCACAGGCCCTGAAGTTCCCTGTGGCC
TTGGAAAAGTGCAGACACTCGCCAATGCTCGTACACAGAAGCATGTGCCTTTGGCAGGCTCTCC
CCTAGAGCCTCTGCAGTCAGCAGAGGTGCTCAACCATGTCTATTCGAGAAACTTAATGAGAAGG
CAAAGCATGACAAGTGCCACAAGAGACCTGTACACTGCTCTGGATGGTAAAGTGACGCAAGAAG
GGAAGAAGGACCATCAGCACGTGCCCATCGACATCCAGACCAGCAAGCTGCTCGATTGGCTGGT
GGACAGAAGGCACTGCAGCCTGAAATGGCAGAGTCTGGTGCTGATGATCCGAGAGAAGATCAAT
GCTGCCATCCAGGACATGCCAGAGAGCGAAGAGATCGCCCAGCTGCTGTCTGGGTCCTACATTC
ACTACTTTCACTGCCTAAAAATCGTGGACCTTCTCAAAGGCACAGAGGCCTCCACGAAAAATAT
TTTTGGCCGATACTCTTCACAGCGGATGAAGGATTGGCAGGAGATTATAGCCCTGTATGAGAAG
GACAACACCTACTTAGTGGAACTCTCTAGCCTCCTGGTTCGGAATGTCAACTATGAGATCCCGT
CACTGAAGAAGCAGATTGCCAAGTGCCAGCAGCTGCAGCAAGAATACAGCCGCAAGGAGGAGGA
GTGCCAGGCAGGGGCTGCTGAGATGCGGGAGCAGTTCTACCACTCCTGCAAGCAGTATGGCATC
ACGGGCGAAAATGTCCGAGGAGAACTGCTGGCCCTGGTGAAGGACCTGCCGAGTCAGCTGGCTG
AGATTGGGGCAGCGGCTCAGCAGTCCCTGGGGGAAGCCATCGACGTGTACCAGGCCTCTGTGGG
GTTTGTGTGTGACAGCCCCACAGAGGAGGTGTTGCCAATGCTGCGGTTCGTGCAGAAGCGGGGA
AACTCAACGGTGTATGAGTGGAGGACGGGGACAGAGCCCTCTGTGGTGGAGCGACCCCACCTCG
AGGAACTTCCTGAGCAGATAGCAGAGGACGCGATTGACTGGGGCGACTTTGGGGTAGAGGCAGT
GTCTGAGGGGACTGACTCTGGCATCTCTGCCGAGGCTGCTGGAATTGACTGGGGCGTCTTCCTG
GAATCAGATTCAAAGGACCCTGGAGGTGATGGGATAGACTGGGGTGACGATGCTGTTGCTTTGC
AGATCACAGTGCTGGAAGCAGGAACCCAGGCTCCAGAAGGTGTTGCCAGGGGCCCAGATGCTCT
GACACTTCTTGAGTACACTGAGACCCGGAATCAGTTCCTTGATGAGCTCATGGAGCTTGAGATC
TTCTTAGCCCAGAGAGCAGTGGAGTTGAGTGAGGAGGCAGACGTCCTGTCTGTGAGCCAGTTCC
AGCTGGCTCCGGCCATCCTGCAGGGCCAGACCAAAGAGAAGATGGTTACCATGGTGTCAGTGCT
GGATAATCTGATAGGCAAGCTCACCAATCTTCAGCTGCAACACCTGTTTATGATCCTGGCCTCA
CCAAGGTATGTGGACCGAGTGACTGAATTTCTCCAGCAAAAGCTGAAGCAGTCCCAGCTGCTGG
CTTTGAAGAAAGAGCTGATGGTGCAGAAGCAGCAGGAGGCACTTGGGGAGCAGGCGGCTCTGGA
GCCTAAGCTGGACCTGCTGCTGGAGAAGAGCAAGGAGCTGCAGAAGCTGATTGAAGCTGACATC
TCCAAGAGGTACAGCGGGCGCCCTGTGAACCTAATGGGAACCTCTCTGTGACACCTTCTTTGTT
CTTGCCTGCCCATCTTCTCAGCCTTTGGGCTGAAGATGATAGCCAGGGCTGATGTTTTGAGGCC
CTTCAAGGCAAACGATCAGGCCCACTGGAAGATGGAAAGCCACAGGAAGGAAGCGGTACCTGAT
GGTGATCTTGGCATTCTTCATGTTCTCTACAAGAAGCTGTGGTGATTGGCCCTGTGGCCTGTCA
GGCAAAAACCACAGCTTCTCCTTCTAGTTAGTATAGCAGACTTAATAAAAGAGGAAAAAAAACT
CTT

hide sequence

RefSeq Acc Id:

XM_037993238 ⟹ XP_037849166

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666077	39,423,492 - 39,434,302 (+)	NCBI

RefSeq Acc Id:

XM_037993239 ⟹ XP_037849167

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666077	39,423,175 - 39,434,302 (+)	NCBI

RefSeq Acc Id:

XM_037993240 ⟹ XP_037849168

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666077	39,423,081 - 39,434,296 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_008011166	(Get FASTA)	NCBI Sequence Viewer
	XP_008011167	(Get FASTA)	NCBI Sequence Viewer
	XP_008011169	(Get FASTA)	NCBI Sequence Viewer
	XP_037849166	(Get FASTA)	NCBI Sequence Viewer
	XP_037849167	(Get FASTA)	NCBI Sequence Viewer
	XP_037849168	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000015482.1

RefSeq Acc Id:	XP_008011169 ⟸ XM_008012978
- Peptide Label:	isoform X5
- UniProtKB:	A0A0D9S3P3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_008011166 ⟸ XM_008012975
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9S3P3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_008011167 ⟸ XM_008012976
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9S3P3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000015482 ⟸ ENSCSAT00000000581

RefSeq Acc Id:	XP_037849168 ⟸ XM_037993240
- Peptide Label:	isoform X4
- UniProtKB:	A0A0D9S3P3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037849167 ⟸ XM_037993239
- Peptide Label:	isoform X3
- UniProtKB:	A0A0D9S3P3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037849166 ⟸ XM_037993238
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9S3P3 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000002562	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000000581.1	UniProtKB/TrEMBL
InterPro	CDK5RAP3	UniProtKB/TrEMBL
KEGG Report	csab:103243591	UniProtKB/TrEMBL
NCBI Gene	CDK5RAP3	ENTREZGENE
PANTHER	CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 3	UniProtKB/TrEMBL
	PTHR14894	UniProtKB/TrEMBL
Pfam	DUF773	UniProtKB/TrEMBL
UniProt	A0A0D9S3P3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar